miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 3' -55.5 NC_004333.2 + 31324 0.66 0.718401
Target:  5'- aCUGACgAAcACCGAgacggcGCUGcGCcGCGCGg -3'
miRNA:   3'- -GGCUGgUUaUGGCU------UGAC-CGcCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 23453 0.66 0.718401
Target:  5'- gUGACCGcccuguCCGGACUgacgGGCGGCaCGg -3'
miRNA:   3'- gGCUGGUuau---GGCUUGA----CCGCCGcGC- -5'
17217 3' -55.5 NC_004333.2 + 40927 0.66 0.718401
Target:  5'- gCGACCAucGCCGGcgACcagaaGGCGcGCGCc -3'
miRNA:   3'- gGCUGGUuaUGGCU--UGa----CCGC-CGCGc -5'
17217 3' -55.5 NC_004333.2 + 14853 0.66 0.718401
Target:  5'- gCCGAUCAGaaugacGCCGGagaGCUGcuGCaGGCGCGu -3'
miRNA:   3'- -GGCUGGUUa-----UGGCU---UGAC--CG-CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 4093 0.66 0.718401
Target:  5'- gCCG-CCcuUACCGAGCg---GGCGCGa -3'
miRNA:   3'- -GGCuGGuuAUGGCUUGaccgCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 7690 0.66 0.718401
Target:  5'- cCCGACCAcgGCguCGuAGC-GGUgaucGGCGCGg -3'
miRNA:   3'- -GGCUGGUuaUG--GC-UUGaCCG----CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 40012 0.66 0.718401
Target:  5'- -gGACUGAUcACgGAACUcGcGCGGCGCc -3'
miRNA:   3'- ggCUGGUUA-UGgCUUGA-C-CGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 19596 0.66 0.718401
Target:  5'- gCGAUCAAcgACgCGAACaaggucacGGCGaGCGCGg -3'
miRNA:   3'- gGCUGGUUa-UG-GCUUGa-------CCGC-CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 45987 0.66 0.714146
Target:  5'- cCCGGCCugccacucggcGCCGAggGCUGGCacggccugcgcuGGCGUa -3'
miRNA:   3'- -GGCUGGuua--------UGGCU--UGACCG------------CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 8016 0.66 0.707739
Target:  5'- gCGACUAcucguCCGAcgGCgacaGCGGCGCGa -3'
miRNA:   3'- gGCUGGUuau--GGCU--UGac--CGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 36376 0.66 0.707739
Target:  5'- cCCGGCgAcUACUcg---GGCGGCGCGu -3'
miRNA:   3'- -GGCUGgUuAUGGcuugaCCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 32464 0.66 0.707739
Target:  5'- gCgGGCCGAcACCGAGaaccccgacGCGGCGCu -3'
miRNA:   3'- -GgCUGGUUaUGGCUUgac------CGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 31159 0.66 0.707739
Target:  5'- aCgGGCCAGgcGCCGAACcuGCaGGCGCu -3'
miRNA:   3'- -GgCUGGUUa-UGGCUUGacCG-CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 24793 0.66 0.707739
Target:  5'- cUCGACCGAUGaCGGgaagaucacGCUGucGCGcGCGCGg -3'
miRNA:   3'- -GGCUGGUUAUgGCU---------UGAC--CGC-CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 44261 0.66 0.697003
Target:  5'- gUCGACU---GCCGGGCaGGCGGaaCGUGa -3'
miRNA:   3'- -GGCUGGuuaUGGCUUGaCCGCC--GCGC- -5'
17217 3' -55.5 NC_004333.2 + 19699 0.66 0.697003
Target:  5'- aCGAUUAugcugcucgcGUGCuCGGcGCUGGUGGCGUGc -3'
miRNA:   3'- gGCUGGU----------UAUG-GCU-UGACCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 32921 0.66 0.686205
Target:  5'- aUCGACCGAc-UCGAGCaGGCcGCGCu -3'
miRNA:   3'- -GGCUGGUUauGGCUUGaCCGcCGCGc -5'
17217 3' -55.5 NC_004333.2 + 26581 0.66 0.675356
Target:  5'- gCGAUCGugucGuuGAACgUGGuCGGCGCGu -3'
miRNA:   3'- gGCUGGUua--UggCUUG-ACC-GCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 20829 0.66 0.675356
Target:  5'- gCGGCUuccUGCCcGACgGGCGGcCGCGc -3'
miRNA:   3'- gGCUGGuu-AUGGcUUGaCCGCC-GCGC- -5'
17217 3' -55.5 NC_004333.2 + 43729 0.66 0.675356
Target:  5'- gUCGAgCuuGUugCGAucCUGGUGGUGCa -3'
miRNA:   3'- -GGCUgGu-UAugGCUu-GACCGCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.