miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 5' -54.3 NC_004333.2 + 14377 0.65 0.79292
Target:  5'- cGCUucaGGUCGGCaauugccugCGCGGUCGCCa -3'
miRNA:   3'- -CGG---CCAGCUGgucaa----GUGCUAGUGGc -5'
17217 5' -54.3 NC_004333.2 + 3761 0.66 0.790965
Target:  5'- uGCCGuacagcGUCGACguGgcguucugaucggccUUCGCGAUCugCGc -3'
miRNA:   3'- -CGGC------CAGCUGguC---------------AAGUGCUAGugGC- -5'
17217 5' -54.3 NC_004333.2 + 46358 0.66 0.787034
Target:  5'- aCCGGcgauaUCGuGCCAGUugucgguguaaUCGgGGUCGCCGu -3'
miRNA:   3'- cGGCC-----AGC-UGGUCA-----------AGUgCUAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 4841 0.66 0.787034
Target:  5'- aGUCGGcUGACC-GUaCGCGcgCGCCGu -3'
miRNA:   3'- -CGGCCaGCUGGuCAaGUGCuaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 7856 0.66 0.787034
Target:  5'- cGCCGGcCauuuCCAGcUCGCGcUCGCCc -3'
miRNA:   3'- -CGGCCaGcu--GGUCaAGUGCuAGUGGc -5'
17217 5' -54.3 NC_004333.2 + 31288 0.66 0.787034
Target:  5'- uGCCGGcgaGACCGGccgCACcugCGCCGa -3'
miRNA:   3'- -CGGCCag-CUGGUCaa-GUGcuaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 27830 0.66 0.78109
Target:  5'- aGCCGG-CGugCAGaUCGCuuucagcacgucgcuGAgcuUCACCGg -3'
miRNA:   3'- -CGGCCaGCugGUCaAGUG---------------CU---AGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 28827 0.66 0.767007
Target:  5'- cGCgCGGUCGACgCGGcgcUCGCGcaGUUGCUGg -3'
miRNA:   3'- -CG-GCCAGCUG-GUCa--AGUGC--UAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 28772 0.66 0.763954
Target:  5'- uGCCGGaagUCGugCuGcUCGCGAUCuggcagcagcacgcACCGg -3'
miRNA:   3'- -CGGCC---AGCugGuCaAGUGCUAG--------------UGGC- -5'
17217 5' -54.3 NC_004333.2 + 23247 0.66 0.756781
Target:  5'- cGCCGGUCGugUuGUUCGUGAcCGuCCa -3'
miRNA:   3'- -CGGCCAGCugGuCAAGUGCUaGU-GGc -5'
17217 5' -54.3 NC_004333.2 + 22972 0.66 0.756781
Target:  5'- cGCCGGcagCGuCgCGGUaC-CGGUCGCCGa -3'
miRNA:   3'- -CGGCCa--GCuG-GUCAaGuGCUAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 28055 0.66 0.756781
Target:  5'- uGCCGuUCuAUCAGggCACGAUCGCa- -3'
miRNA:   3'- -CGGCcAGcUGGUCaaGUGCUAGUGgc -5'
17217 5' -54.3 NC_004333.2 + 34589 0.66 0.756781
Target:  5'- aGCaCGGUUGACgCGGUauugCGCGGUaACCa -3'
miRNA:   3'- -CG-GCCAGCUG-GUCAa---GUGCUAgUGGc -5'
17217 5' -54.3 NC_004333.2 + 45640 0.66 0.746426
Target:  5'- gGCUGGUCGAgCGc--CAUGAgCACCGa -3'
miRNA:   3'- -CGGCCAGCUgGUcaaGUGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 25443 0.66 0.746426
Target:  5'- cGCCGGgCGuGCCGGUUacgACGA-CACCc -3'
miRNA:   3'- -CGGCCaGC-UGGUCAAg--UGCUaGUGGc -5'
17217 5' -54.3 NC_004333.2 + 4351 0.67 0.739108
Target:  5'- aGCCGGgcacgauguugugUCGACCGGgcgCACGAacgugcgcggcauccUCacGCCGa -3'
miRNA:   3'- -CGGCC-------------AGCUGGUCaa-GUGCU---------------AG--UGGC- -5'
17217 5' -54.3 NC_004333.2 + 13970 0.67 0.735955
Target:  5'- aGgCGG-CGGCCGGUgcgCGCGAgCugCGc -3'
miRNA:   3'- -CgGCCaGCUGGUCAa--GUGCUaGugGC- -5'
17217 5' -54.3 NC_004333.2 + 42090 0.67 0.735955
Target:  5'- cGCUcGUUGGCCGcgcgcUUCACGcgCACCGa -3'
miRNA:   3'- -CGGcCAGCUGGUc----AAGUGCuaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 2940 0.67 0.735955
Target:  5'- cGCCGcugCGACgucGUUCGCGAaCGCCGc -3'
miRNA:   3'- -CGGCca-GCUGgu-CAAGUGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 29783 0.67 0.72538
Target:  5'- aGCUGGcgCGGgUcGUUCGCGAcgacggUCACCGg -3'
miRNA:   3'- -CGGCCa-GCUgGuCAAGUGCU------AGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.