miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17218 5' -54.8 NC_004333.2 + 1476 0.66 0.703172
Target:  5'- gUCGGCAagCGGuAUGaGUACAAGCgcgGCUu -3'
miRNA:   3'- gAGCCGUa-GCU-UGC-CGUGUUCGa--CGA- -5'
17218 5' -54.8 NC_004333.2 + 38410 0.66 0.70207
Target:  5'- uUCGGCuUCGGuCGGCACGcccucgaGGC-GCa -3'
miRNA:   3'- gAGCCGuAGCUuGCCGUGU-------UCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 37264 0.66 0.698757
Target:  5'- aCUCGGCAccggcgcgcgucgUGAGCGGCGugucgcCGcGCUGCg -3'
miRNA:   3'- -GAGCCGUa------------GCUUGCCGU------GUuCGACGa -5'
17218 5' -54.8 NC_004333.2 + 5701 0.66 0.692114
Target:  5'- -aCGGCAUgGuGCGcGUugccuGCAAGCUGCc -3'
miRNA:   3'- gaGCCGUAgCuUGC-CG-----UGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 19718 0.66 0.680994
Target:  5'- gCUCGGCGcUGGuggcgugcaagACGGCGCc-GCUGCc -3'
miRNA:   3'- -GAGCCGUaGCU-----------UGCCGUGuuCGACGa -5'
17218 5' -54.8 NC_004333.2 + 30640 0.66 0.680994
Target:  5'- -gCGGCAagGcGCGGCGUgcGCUGCUc -3'
miRNA:   3'- gaGCCGUagCuUGCCGUGuuCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 47970 0.66 0.680994
Target:  5'- gUCGGCGUCaucGGCGGUguGC-GGCUGUg -3'
miRNA:   3'- gAGCCGUAGc--UUGCCG--UGuUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 45031 0.66 0.680994
Target:  5'- gUCGGCcgCcGACGuGCGCGcgcaggauAGCUGCc -3'
miRNA:   3'- gAGCCGuaGcUUGC-CGUGU--------UCGACGa -5'
17218 5' -54.8 NC_004333.2 + 2995 0.66 0.680994
Target:  5'- -gCGGCA-CGuuGACGGuCACGAccGCUGCg -3'
miRNA:   3'- gaGCCGUaGC--UUGCC-GUGUU--CGACGa -5'
17218 5' -54.8 NC_004333.2 + 36375 0.66 0.680994
Target:  5'- -cCGGCGacuacUCGGGCGGCGCGuaucGCaugGCg -3'
miRNA:   3'- gaGCCGU-----AGCUUGCCGUGUu---CGa--CGa -5'
17218 5' -54.8 NC_004333.2 + 14771 0.66 0.666468
Target:  5'- gCUUGGCGcacUCGugccacaccugcacuCGGCcgACAAGCUGCg -3'
miRNA:   3'- -GAGCCGU---AGCuu-------------GCCG--UGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 13598 0.66 0.666468
Target:  5'- -gCGGCAacgccgcgagcacgUCGGACGGCgACcAGCUGa- -3'
miRNA:   3'- gaGCCGU--------------AGCUUGCCG-UGuUCGACga -5'
17218 5' -54.8 NC_004333.2 + 30744 0.66 0.663107
Target:  5'- -gCGGCGgcgCGAACGGCuucaugaaggugcuCGAGCaGCg -3'
miRNA:   3'- gaGCCGUa--GCUUGCCGu-------------GUUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 21424 0.66 0.658621
Target:  5'- aUgGGCAaaUUGGGCGGCGCAGGaC-GCg -3'
miRNA:   3'- gAgCCGU--AGCUUGCCGUGUUC-GaCGa -5'
17218 5' -54.8 NC_004333.2 + 12114 0.66 0.658621
Target:  5'- gUCGaacuuacCGAGCGGCACGAGCUcGCc -3'
miRNA:   3'- gAGCcgua---GCUUGCCGUGUUCGA-CGa -5'
17218 5' -54.8 NC_004333.2 + 23697 0.67 0.636145
Target:  5'- -cCGGCGgaaaacCGAGCGauuggcucGCGCGAGUUGCg -3'
miRNA:   3'- gaGCCGUa-----GCUUGC--------CGUGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 16529 0.67 0.636145
Target:  5'- uCUCgGGCcgCGAGCGGUggcGCAA-CUGCc -3'
miRNA:   3'- -GAG-CCGuaGCUUGCCG---UGUUcGACGa -5'
17218 5' -54.8 NC_004333.2 + 39212 0.67 0.636145
Target:  5'- -cCGcGCAUCccguCGGC-CGAGCUGCg -3'
miRNA:   3'- gaGC-CGUAGcuu-GCCGuGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 46743 0.67 0.636145
Target:  5'- uUCGGUAUUGGuCGGUugGGGCaUGUc -3'
miRNA:   3'- gAGCCGUAGCUuGCCGugUUCG-ACGa -5'
17218 5' -54.8 NC_004333.2 + 20529 0.67 0.636145
Target:  5'- -cCGGCugcgucaCGAcCGGCGCAGGCUucGCg -3'
miRNA:   3'- gaGCCGua-----GCUuGCCGUGUUCGA--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.