Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18048 | 5' | -54.1 | NC_004680.1 | + | 13409 | 0.66 | 0.792417 |
Target: 5'- cGCGGCgagUCCAUuucggggaccgGCCGCGGcauUCCACa- -3' miRNA: 3'- aCGUCG---AGGUG-----------UGGCGUUu--AGGUGcg -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 5257 | 0.66 | 0.792417 |
Target: 5'- aGguGCcaCCACGCCaGCGAuguggaCCACGUu -3' miRNA: 3'- aCguCGa-GGUGUGG-CGUUua----GGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 20241 | 0.66 | 0.792417 |
Target: 5'- uUGCAGaucaccggUCCGCGCgGCAA--UUACGCg -3' miRNA: 3'- -ACGUCg-------AGGUGUGgCGUUuaGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 12330 | 0.66 | 0.79143 |
Target: 5'- cGCcGCUucgggugCCGCGCCGgGgAGUCC-CGCg -3' miRNA: 3'- aCGuCGA-------GGUGUGGCgU-UUAGGuGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 34207 | 0.66 | 0.782464 |
Target: 5'- cUGC-GCaUCCACACuCGCAugacccagGAUCUccauACGCg -3' miRNA: 3'- -ACGuCG-AGGUGUG-GCGU--------UUAGG----UGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 46352 | 0.66 | 0.782464 |
Target: 5'- cGCAGuCUgCGCAuCCGUu--UCCGcCGCa -3' miRNA: 3'- aCGUC-GAgGUGU-GGCGuuuAGGU-GCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 43586 | 0.66 | 0.782464 |
Target: 5'- cGguGUcCCACcuGCCGCGAAacuugucCCACGUg -3' miRNA: 3'- aCguCGaGGUG--UGGCGUUUa------GGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 32209 | 0.66 | 0.782464 |
Target: 5'- cUGCAGCUaCugACCGCuacgaagCUgaACGCg -3' miRNA: 3'- -ACGUCGAgGugUGGCGuuua---GG--UGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 42204 | 0.66 | 0.773371 |
Target: 5'- aGCugGGCUgCCAcCACCGCAccgugcagcgugcCCGCGCg -3' miRNA: 3'- aCG--UCGA-GGU-GUGGCGUuua----------GGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 28317 | 0.66 | 0.772352 |
Target: 5'- aGCAGCaCCAUuCCcgauggGCAAAUCCAuugcCGCu -3' miRNA: 3'- aCGUCGaGGUGuGG------CGUUUAGGU----GCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 9926 | 0.66 | 0.772352 |
Target: 5'- cGCGGCcagccaCCGCGCCaGCcu-UCgACGCa -3' miRNA: 3'- aCGUCGa-----GGUGUGG-CGuuuAGgUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 47914 | 0.66 | 0.772352 |
Target: 5'- cGCAGCcagCCgGCGCUcCAAcUCCGCGUc -3' miRNA: 3'- aCGUCGa--GG-UGUGGcGUUuAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 10680 | 0.66 | 0.766213 |
Target: 5'- aGCGGCaUCCcggaacgccucuuugAUGCCGuCGccgugggcaacGAUCCACGCg -3' miRNA: 3'- aCGUCG-AGG---------------UGUGGC-GU-----------UUAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 22132 | 0.66 | 0.762092 |
Target: 5'- cGCuGUUCCcgACGCCGCG----CGCGCa -3' miRNA: 3'- aCGuCGAGG--UGUGGCGUuuagGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 22403 | 0.66 | 0.762092 |
Target: 5'- cGCGguaauaccGCUCCGCGCCGgAcauUCCAaccUGCg -3' miRNA: 3'- aCGU--------CGAGGUGUGGCgUuu-AGGU---GCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 44408 | 0.66 | 0.762092 |
Target: 5'- cGUugAGCcCCACAUacuuugagGCGGAUCCGCGUu -3' miRNA: 3'- aCG--UCGaGGUGUGg-------CGUUUAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 21779 | 0.66 | 0.751696 |
Target: 5'- cGgGGCUaucCCAgACUGC---UCCGCGCg -3' miRNA: 3'- aCgUCGA---GGUgUGGCGuuuAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 4880 | 0.66 | 0.751696 |
Target: 5'- ---cGUUCCACcgguCgGCGGAUUCGCGCa -3' miRNA: 3'- acguCGAGGUGu---GgCGUUUAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 58656 | 0.66 | 0.751696 |
Target: 5'- gUGuCGGC-CCACgugucgcguccGCCGUGuuUCCAUGCg -3' miRNA: 3'- -AC-GUCGaGGUG-----------UGGCGUuuAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 12703 | 0.66 | 0.751696 |
Target: 5'- gGCGGC-CagguCGCCGCG-AUCgGCGCc -3' miRNA: 3'- aCGUCGaGgu--GUGGCGUuUAGgUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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