miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 26251 0.66 0.849856
Target:  5'- cCGGacuccuCGGCGGugUCGcCCUCACCg -3'
miRNA:   3'- uGUCguu---GUCGCUugGGUaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 58359 0.66 0.847254
Target:  5'- -uGGCGAUGcguuguugguauucGCGGGgCCGUUCUCGCCc -3'
miRNA:   3'- ugUCGUUGU--------------CGCUUgGGUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 12952 0.66 0.8411
Target:  5'- gGCGGCGGCuuGCGggUCgauGUCCUUGCg -3'
miRNA:   3'- -UGUCGUUGu-CGCuuGGg--UAGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 29781 0.66 0.8411
Target:  5'- --cGCAACacaucGGUGAACCUAaCgUCGCCg -3'
miRNA:   3'- uguCGUUG-----UCGCUUGGGUaGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 16122 0.66 0.8411
Target:  5'- gACGGUAugcCAGUGAACCCGaCaacaaUCAUCa -3'
miRNA:   3'- -UGUCGUu--GUCGCUUGGGUaGg----AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 57321 0.66 0.838428
Target:  5'- cGCGGUAAggauccacgccggcCGGCGAACCUgaaacgCgUCACCg -3'
miRNA:   3'- -UGUCGUU--------------GUCGCUUGGGua----GgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 42693 0.66 0.832117
Target:  5'- cGCGGCGACGGUggggugcagucGAACCgCGUUg-CGCCg -3'
miRNA:   3'- -UGUCGUUGUCG-----------CUUGG-GUAGgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 12349 0.66 0.822918
Target:  5'- cCAGCGcCuugGGCGGGCCaguUCgUCACCg -3'
miRNA:   3'- uGUCGUuG---UCGCUUGGgu-AGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 36668 0.66 0.822918
Target:  5'- --cGCAAcCAGCGGGgcguCCCGUUCgaUCGCCg -3'
miRNA:   3'- uguCGUU-GUCGCUU----GGGUAGG--AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 47795 0.66 0.822918
Target:  5'- uCGGCAACGGaCGAAaCCCGcUCC-CAUg -3'
miRNA:   3'- uGUCGUUGUC-GCUU-GGGU-AGGaGUGg -5'
18049 3' -53.1 NC_004680.1 + 954 0.66 0.822918
Target:  5'- cCGGCAGCGuCaAACCCGUCa-CACCg -3'
miRNA:   3'- uGUCGUUGUcGcUUGGGUAGgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 46953 0.66 0.813513
Target:  5'- gACGGCuuuAUAGCGGgucACCUGUCCacCGCUg -3'
miRNA:   3'- -UGUCGu--UGUCGCU---UGGGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 1682 0.66 0.813513
Target:  5'- ---cCAGCAGUGAcgaacGCuCCAUCCggCACCg -3'
miRNA:   3'- ugucGUUGUCGCU-----UG-GGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 13872 0.66 0.812562
Target:  5'- gACAGCAACGGCG-ACUgggacgguaacggCAUCCgCAUg -3'
miRNA:   3'- -UGUCGUUGUCGCuUGG-------------GUAGGaGUGg -5'
18049 3' -53.1 NC_004680.1 + 14684 0.67 0.803912
Target:  5'- -aGGCGACuucGCGGggaucGCCgCGUUCUCACUg -3'
miRNA:   3'- ugUCGUUGu--CGCU-----UGG-GUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 15268 0.67 0.803912
Target:  5'- cGCAGUu-CAGCGGugCCGgUCCaugCGCUg -3'
miRNA:   3'- -UGUCGuuGUCGCUugGGU-AGGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 25880 0.67 0.803912
Target:  5'- aGCgAGCucccGGCAG-GAGCUUAUCCUgGCCg -3'
miRNA:   3'- -UG-UCG----UUGUCgCUUGGGUAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 12144 0.67 0.803912
Target:  5'- -gGGCAACAuC-AACCCGUCCggCGCUg -3'
miRNA:   3'- ugUCGUUGUcGcUUGGGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 17786 0.67 0.794125
Target:  5'- uGCGGCGcaguUGGUGAACaUCAUCCUugCGCCg -3'
miRNA:   3'- -UGUCGUu---GUCGCUUG-GGUAGGA--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 50168 0.67 0.794125
Target:  5'- cGCGGUcGCAcCGGGCCgGUCCU-ACCg -3'
miRNA:   3'- -UGUCGuUGUcGCUUGGgUAGGAgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.