miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18050 5' -50.9 NC_004680.1 + 21311 0.67 0.874545
Target:  5'- gGgGCCACgGuGUUCGcGGUGGugGCGUg -3'
miRNA:   3'- aUgCGGUGgC-UAAGU-CUAUCugUGCG- -5'
18050 5' -50.9 NC_004680.1 + 19722 0.72 0.606473
Target:  5'- gUACGCCACCuGGUggagCGGGUaacggcgguaaGGGCGCGUu -3'
miRNA:   3'- -AUGCGGUGG-CUAa---GUCUA-----------UCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 19526 0.68 0.856285
Target:  5'- gGCGCCGCCGGUgguaacaccacguugUCuaucuccacaccgggGGGU-GACACGUa -3'
miRNA:   3'- aUGCGGUGGCUA---------------AG---------------UCUAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 18520 0.68 0.857996
Target:  5'- cACGCCGCCG---CGGAUagcGGACAC-Ca -3'
miRNA:   3'- aUGCGGUGGCuaaGUCUA---UCUGUGcG- -5'
18050 5' -50.9 NC_004680.1 + 18121 0.68 0.849343
Target:  5'- cGCGCCGauCCGGUUgCAGGUGGuGC-CGUa -3'
miRNA:   3'- aUGCGGU--GGCUAA-GUCUAUC-UGuGCG- -5'
18050 5' -50.9 NC_004680.1 + 17928 0.69 0.80167
Target:  5'- gAUGCCACCGAUaggCAGGaucgucaacagacUGGGCA-GCa -3'
miRNA:   3'- aUGCGGUGGCUAa--GUCU-------------AUCUGUgCG- -5'
18050 5' -50.9 NC_004680.1 + 16255 0.73 0.550491
Target:  5'- gUACGgCGCCGAggcugUCGGAUAGAacCGCu -3'
miRNA:   3'- -AUGCgGUGGCUa----AGUCUAUCUguGCG- -5'
18050 5' -50.9 NC_004680.1 + 14282 0.7 0.740553
Target:  5'- gAUGCCACCcuGUUCGGuccuGGCACGUu -3'
miRNA:   3'- aUGCGGUGGc-UAAGUCuau-CUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 13245 0.66 0.917649
Target:  5'- gGCGCCACCGAagaCGGcaucaccaacAUuGAUGCGCu -3'
miRNA:   3'- aUGCGGUGGCUaa-GUC----------UAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 12951 0.66 0.911176
Target:  5'- --aGCCACCGAggaCGGAacaggccGGACGuCGCg -3'
miRNA:   3'- augCGGUGGCUaa-GUCUa------UCUGU-GCG- -5'
18050 5' -50.9 NC_004680.1 + 12567 0.7 0.729725
Target:  5'- --gGCCACCGGUgaaCAGGcuuuGugGCGCa -3'
miRNA:   3'- augCGGUGGCUAa--GUCUau--CugUGCG- -5'
18050 5' -50.9 NC_004680.1 + 12380 0.66 0.904414
Target:  5'- cGCcCCACUGGUcgGGAUGGGCACa- -3'
miRNA:   3'- aUGcGGUGGCUAagUCUAUCUGUGcg -5'
18050 5' -50.9 NC_004680.1 + 12324 0.7 0.740553
Target:  5'- gGCGaCCGCCGcUUCGGGU-GcCGCGCc -3'
miRNA:   3'- aUGC-GGUGGCuAAGUCUAuCuGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 11441 0.68 0.840448
Target:  5'- cAgGCCGCCGAgaugcgcaugUCGGAUGcGCGgGCg -3'
miRNA:   3'- aUgCGGUGGCUa---------AGUCUAUcUGUgCG- -5'
18050 5' -50.9 NC_004680.1 + 10386 0.67 0.890034
Target:  5'- aAUGCUGCCGGguucgcgaaagcUUCuGGU-GACACGCu -3'
miRNA:   3'- aUGCGGUGGCU------------AAGuCUAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 9101 0.66 0.926221
Target:  5'- aGCGUCGCCGAUuggcaUCAGGgcagguuguccaguuUAGAguUGCu -3'
miRNA:   3'- aUGCGGUGGCUA-----AGUCU---------------AUCUguGCG- -5'
18050 5' -50.9 NC_004680.1 + 8858 0.66 0.9138
Target:  5'- -uCGCCGCCGcgugaggugcggaucGUUCAGGUcguguuGGGCAUGg -3'
miRNA:   3'- auGCGGUGGC---------------UAAGUCUA------UCUGUGCg -5'
18050 5' -50.9 NC_004680.1 + 7197 0.66 0.917649
Target:  5'- cACGCCACCaacaCAcGAUGGAUacucgGCGCu -3'
miRNA:   3'- aUGCGGUGGcuaaGU-CUAUCUG-----UGCG- -5'
18050 5' -50.9 NC_004680.1 + 7145 0.66 0.909178
Target:  5'- -gUGCCGCCGAacuguuuagcugucUUCuGGGcAGGCGCGUa -3'
miRNA:   3'- auGCGGUGGCU--------------AAG-UCUaUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 7071 0.67 0.8664
Target:  5'- aUGCGCCugCGGaUCAGu----CGCGCc -3'
miRNA:   3'- -AUGCGGugGCUaAGUCuaucuGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.