miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18066 3' -55.4 NC_004680.1 + 12787 0.66 0.746895
Target:  5'- gGCGCCGAuCGCGGCgaccuGGCCGc--CGUa -3'
miRNA:   3'- aCGUGGCU-GUGCUG-----UCGGCuuaGCGa -5'
18066 3' -55.4 NC_004680.1 + 4340 0.66 0.746895
Target:  5'- aGCGCUGACccccuCGGCGGuCUGGAUaaCGCa -3'
miRNA:   3'- aCGUGGCUGu----GCUGUC-GGCUUA--GCGa -5'
18066 3' -55.4 NC_004680.1 + 17153 0.66 0.73648
Target:  5'- cUGCGCCGGgAuCGACaccugggccagAGUCGAGuUCGCg -3'
miRNA:   3'- -ACGUGGCUgU-GCUG-----------UCGGCUU-AGCGa -5'
18066 3' -55.4 NC_004680.1 + 43634 0.66 0.725962
Target:  5'- cGCGagggaCGACGCGAaAGCCGg--CGCa -3'
miRNA:   3'- aCGUg----GCUGUGCUgUCGGCuuaGCGa -5'
18066 3' -55.4 NC_004680.1 + 23422 0.66 0.725962
Target:  5'- cUGUuugACCGugACGGCAcGCUG-AUCGUg -3'
miRNA:   3'- -ACG---UGGCugUGCUGU-CGGCuUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 14934 0.66 0.715351
Target:  5'- gGuCGCCgGACugGAgGGCCG-AUUGCc -3'
miRNA:   3'- aC-GUGG-CUGugCUgUCGGCuUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 49124 0.66 0.715351
Target:  5'- aGC-CCGGCacucuaagccGCGACGGCgaGGUCGCUa -3'
miRNA:   3'- aCGuGGCUG----------UGCUGUCGgcUUAGCGA- -5'
18066 3' -55.4 NC_004680.1 + 27276 0.66 0.704658
Target:  5'- gGCGgCGACGCuGCcGCCGAGaaccUCGCc -3'
miRNA:   3'- aCGUgGCUGUGcUGuCGGCUU----AGCGa -5'
18066 3' -55.4 NC_004680.1 + 40776 0.66 0.693895
Target:  5'- aGuCAUCGACAUGACcGCCG--UUGCUc -3'
miRNA:   3'- aC-GUGGCUGUGCUGuCGGCuuAGCGA- -5'
18066 3' -55.4 NC_004680.1 + 7624 0.67 0.683073
Target:  5'- gGCACCGACugGAgcgcCGGCgGAuUCaCUg -3'
miRNA:   3'- aCGUGGCUGugCU----GUCGgCUuAGcGA- -5'
18066 3' -55.4 NC_004680.1 + 1737 0.67 0.683073
Target:  5'- cGCAaucucagUGAcCACGACAGCCG--UCGCa -3'
miRNA:   3'- aCGUg------GCU-GUGCUGUCGGCuuAGCGa -5'
18066 3' -55.4 NC_004680.1 + 26466 0.67 0.683073
Target:  5'- cGCucGCCGACAgGAUcGCUGAccgcAUCGCc -3'
miRNA:   3'- aCG--UGGCUGUgCUGuCGGCU----UAGCGa -5'
18066 3' -55.4 NC_004680.1 + 5901 0.67 0.672203
Target:  5'- uUGCugCGGCGCuugGAUuGCCGAG-CGCc -3'
miRNA:   3'- -ACGugGCUGUG---CUGuCGGCUUaGCGa -5'
18066 3' -55.4 NC_004680.1 + 23895 0.67 0.672203
Target:  5'- cGCAgcUUGACGguaaGGCGGCCGcGUCGCa -3'
miRNA:   3'- aCGU--GGCUGUg---CUGUCGGCuUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 12422 0.67 0.670024
Target:  5'- cGCGggacuccCCGGCGCGGCAcCCGAagcggcgGUCGCc -3'
miRNA:   3'- aCGU-------GGCUGUGCUGUcGGCU-------UAGCGa -5'
18066 3' -55.4 NC_004680.1 + 52196 0.67 0.661295
Target:  5'- cUGCGCCGGCAagcCGACgAGCCaGGagGCg -3'
miRNA:   3'- -ACGUGGCUGU---GCUG-UCGGcUUagCGa -5'
18066 3' -55.4 NC_004680.1 + 29252 0.67 0.661295
Target:  5'- cGCACCGAUuccaagaucauGCGGCAGugaCCGcucuAGUCGCc -3'
miRNA:   3'- aCGUGGCUG-----------UGCUGUC---GGC----UUAGCGa -5'
18066 3' -55.4 NC_004680.1 + 24245 0.67 0.65036
Target:  5'- uUGCACCGACuCGuCAGCCu--UCGaCa -3'
miRNA:   3'- -ACGUGGCUGuGCuGUCGGcuuAGC-Ga -5'
18066 3' -55.4 NC_004680.1 + 210 0.67 0.65036
Target:  5'- uUGCGCCGAgCACGcACAGaaGGAUCu-- -3'
miRNA:   3'- -ACGUGGCU-GUGC-UGUCggCUUAGcga -5'
18066 3' -55.4 NC_004680.1 + 9669 0.67 0.639409
Target:  5'- -uCGCCGAuCGCGcggccaGCAGCCGAAcCGCc -3'
miRNA:   3'- acGUGGCU-GUGC------UGUCGGCUUaGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.