miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18067 3' -53.9 NC_004680.1 + 17518 0.66 0.827015
Target:  5'- aGACGGCACCGCaugaGCCcacuCCGGcaacggAUCa -3'
miRNA:   3'- gUUGUUGUGGUGg---CGGcu--GGCCa-----UAG- -5'
18067 3' -53.9 NC_004680.1 + 38683 0.66 0.827015
Target:  5'- uCGACAugGCCuGCCGCUccaACCGGg--- -3'
miRNA:   3'- -GUUGUugUGG-UGGCGGc--UGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 21720 0.66 0.827015
Target:  5'- aCGACGACACCcccccgGCC-CCGGCCGa---- -3'
miRNA:   3'- -GUUGUUGUGG------UGGcGGCUGGCcauag -5'
18067 3' -53.9 NC_004680.1 + 1830 0.66 0.827015
Target:  5'- uCGACGAuCGCCGCguggGCgGGCCGGUucccggAUCg -3'
miRNA:   3'- -GUUGUU-GUGGUGg---CGgCUGGCCA------UAG- -5'
18067 3' -53.9 NC_004680.1 + 21443 0.66 0.826103
Target:  5'- --cCGGCGCCGCCauacgugGCCGACgGGg--- -3'
miRNA:   3'- guuGUUGUGGUGG-------CGGCUGgCCauag -5'
18067 3' -53.9 NC_004680.1 + 4001 0.66 0.817801
Target:  5'- gCAGCGGCguccaguucuACCGCCGCgucuUGACCGGc--- -3'
miRNA:   3'- -GUUGUUG----------UGGUGGCG----GCUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 55027 0.66 0.817801
Target:  5'- -cGCAugGCuCGCCGCCuGAUCucuGUGUCa -3'
miRNA:   3'- guUGUugUG-GUGGCGG-CUGGc--CAUAG- -5'
18067 3' -53.9 NC_004680.1 + 46081 0.66 0.817801
Target:  5'- cCGACAccACGCCcUCGCCGACCa----- -3'
miRNA:   3'- -GUUGU--UGUGGuGGCGGCUGGccauag -5'
18067 3' -53.9 NC_004680.1 + 9010 0.66 0.808391
Target:  5'- cCAGCAGCACgACCGuuGAUCuGcuUCg -3'
miRNA:   3'- -GUUGUUGUGgUGGCggCUGGcCauAG- -5'
18067 3' -53.9 NC_004680.1 + 30796 0.66 0.808391
Target:  5'- gAGCGG-AUCACCGgCGACCGGa--- -3'
miRNA:   3'- gUUGUUgUGGUGGCgGCUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 12777 0.66 0.808391
Target:  5'- gCGGCGACcugGCCGCCGUacuCGAuggcCCGGUugAUCa -3'
miRNA:   3'- -GUUGUUG---UGGUGGCG---GCU----GGCCA--UAG- -5'
18067 3' -53.9 NC_004680.1 + 28302 0.66 0.808391
Target:  5'- aGGgAACACCGgUGCCGcACaCGGUGaUCa -3'
miRNA:   3'- gUUgUUGUGGUgGCGGC-UG-GCCAU-AG- -5'
18067 3' -53.9 NC_004680.1 + 1759 0.66 0.808391
Target:  5'- cCAACAACAU--CUGCCGGCCcGUcgCa -3'
miRNA:   3'- -GUUGUUGUGguGGCGGCUGGcCAuaG- -5'
18067 3' -53.9 NC_004680.1 + 43531 0.66 0.798794
Target:  5'- -uGCGACGCCGCCacguucgaccagGgCGGCCGGg--- -3'
miRNA:   3'- guUGUUGUGGUGG------------CgGCUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 10095 0.66 0.798794
Target:  5'- gCAGCGACGUCgauGCCGgcCCGACCGGUc-- -3'
miRNA:   3'- -GUUGUUGUGG---UGGC--GGCUGGCCAuag -5'
18067 3' -53.9 NC_004680.1 + 40781 0.66 0.798794
Target:  5'- uCGACAugACCGCCGuugcucucaCCGACCcGGc--- -3'
miRNA:   3'- -GUUGUugUGGUGGC---------GGCUGG-CCauag -5'
18067 3' -53.9 NC_004680.1 + 59215 0.66 0.789022
Target:  5'- ----uGCGCCGCCGCgUGAUCGGgGUUg -3'
miRNA:   3'- guuguUGUGGUGGCG-GCUGGCCaUAG- -5'
18067 3' -53.9 NC_004680.1 + 5207 0.66 0.789022
Target:  5'- gGACuACAagGCCGCUGGCCGGc--- -3'
miRNA:   3'- gUUGuUGUggUGGCGGCUGGCCauag -5'
18067 3' -53.9 NC_004680.1 + 8360 0.66 0.785067
Target:  5'- uCGGCAGCACCuuguacgucagguCCGCCGugUcagGGUcgGUCu -3'
miRNA:   3'- -GUUGUUGUGGu------------GGCGGCugG---CCA--UAG- -5'
18067 3' -53.9 NC_004680.1 + 32476 0.66 0.779086
Target:  5'- gCGACGACgGCCGCacgaaauggCGCgGACCaGUGUCc -3'
miRNA:   3'- -GUUGUUG-UGGUG---------GCGgCUGGcCAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.