miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18073 3' -58.1 NC_004680.1 + 12194 0.66 0.619666
Target:  5'- uGGCGGUagCCGCcCCgUC-CGCGGCaGCg -3'
miRNA:   3'- cUUGCUA--GGCGuGG-AGuGCGCCGcCG- -5'
18073 3' -58.1 NC_004680.1 + 34130 0.66 0.619666
Target:  5'- aGGugGugugCCGCGagUUGUGCGGCGGCa -3'
miRNA:   3'- -CUugCua--GGCGUggAGUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 3419 0.66 0.618597
Target:  5'- uGGGgGAgaaguauUCCGCAgcaUCUCugGCuaaGGCGGCc -3'
miRNA:   3'- -CUUgCU-------AGGCGU---GGAGugCG---CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 8168 0.66 0.608987
Target:  5'- -cGCGcgCCGCACUUC---CGGCGGg -3'
miRNA:   3'- cuUGCuaGGCGUGGAGugcGCCGCCg -5'
18073 3' -58.1 NC_004680.1 + 39021 0.66 0.608987
Target:  5'- --cCGAagCGCGCUaCACGUGGCcGCa -3'
miRNA:   3'- cuuGCUagGCGUGGaGUGCGCCGcCG- -5'
18073 3' -58.1 NC_004680.1 + 41170 0.66 0.598327
Target:  5'- -cACGcgCCGCGCCUUugccuuguCGUccaGCGGCa -3'
miRNA:   3'- cuUGCuaGGCGUGGAGu-------GCGc--CGCCG- -5'
18073 3' -58.1 NC_004680.1 + 38581 0.66 0.598327
Target:  5'- uGGugGAUCCGUGgCUgGCccgguuggaGCGGCaGGCc -3'
miRNA:   3'- -CUugCUAGGCGUgGAgUG---------CGCCG-CCG- -5'
18073 3' -58.1 NC_004680.1 + 21752 0.66 0.584511
Target:  5'- gGAACGGUgaGUgccACCUCGuCGCGGCcgaauaagugggcuGGCa -3'
miRNA:   3'- -CUUGCUAggCG---UGGAGU-GCGCCG--------------CCG- -5'
18073 3' -58.1 NC_004680.1 + 35159 0.66 0.577096
Target:  5'- --cUGGUCuugaCGCGCUUCGCGCGGUGu- -3'
miRNA:   3'- cuuGCUAG----GCGUGGAGUGCGCCGCcg -5'
18073 3' -58.1 NC_004680.1 + 51616 0.66 0.577096
Target:  5'- aGGGCGAgCCGCGCUggaACGaCGGCaacguguggacuGGCg -3'
miRNA:   3'- -CUUGCUaGGCGUGGag-UGC-GCCG------------CCG- -5'
18073 3' -58.1 NC_004680.1 + 10315 0.66 0.577096
Target:  5'- cAACuGAUCCauGCugACCUUGCcgGUGGCGGCg -3'
miRNA:   3'- cUUG-CUAGG--CG--UGGAGUG--CGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 38451 0.66 0.577096
Target:  5'- ---gGAUCgGCuccaacGCCUCACGgGcaGCGGCg -3'
miRNA:   3'- cuugCUAGgCG------UGGAGUGCgC--CGCCG- -5'
18073 3' -58.1 NC_004680.1 + 33201 0.67 0.556036
Target:  5'- uGGCGAUgCgGC-CCUCuucgacguCGCGGCGGa -3'
miRNA:   3'- cUUGCUA-GgCGuGGAGu-------GCGCCGCCg -5'
18073 3' -58.1 NC_004680.1 + 27546 0.67 0.556036
Target:  5'- --cUGAUcCCGCGCCaggcaGCGCGGgaccCGGCg -3'
miRNA:   3'- cuuGCUA-GGCGUGGag---UGCGCC----GCCG- -5'
18073 3' -58.1 NC_004680.1 + 25816 0.67 0.556036
Target:  5'- -uGCGuUCgGCACUgCG-GCGGCGGCc -3'
miRNA:   3'- cuUGCuAGgCGUGGaGUgCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 42666 0.67 0.545589
Target:  5'- cGACGA-CgGCGCCUCcuacacggAUGCcGCGGCg -3'
miRNA:   3'- cUUGCUaGgCGUGGAG--------UGCGcCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 19523 0.67 0.545589
Target:  5'- aAAUGcUCaccgCGCACC-CAUGUGGUGGCg -3'
miRNA:   3'- cUUGCuAG----GCGUGGaGUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 17196 0.67 0.545589
Target:  5'- uGACGA-CCGUguaACCggaCACGCGG-GGCc -3'
miRNA:   3'- cUUGCUaGGCG---UGGa--GUGCGCCgCCG- -5'
18073 3' -58.1 NC_004680.1 + 19278 0.67 0.545589
Target:  5'- cGAGCGGgucaCCGaCGCCUUcacaaucgACGaCGGCGGg -3'
miRNA:   3'- -CUUGCUa---GGC-GUGGAG--------UGC-GCCGCCg -5'
18073 3' -58.1 NC_004680.1 + 42533 0.67 0.524892
Target:  5'- --uCGcgCCcCGCCUCAUGCGacaccccugaGCGGCg -3'
miRNA:   3'- cuuGCuaGGcGUGGAGUGCGC----------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.