miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18077 3' -54.8 NC_004680.1 + 47074 0.66 0.784021
Target:  5'- cUGCCGUGuuGACCaUAUCCGCuGGUGgGAg -3'
miRNA:   3'- aGCGGCGC--UUGG-GUAGGUG-UUACgCU- -5'
18077 3' -54.8 NC_004680.1 + 25420 0.66 0.784021
Target:  5'- aCGCCgaacugGCGGcCCuCGUCUACGAgGCGAu -3'
miRNA:   3'- aGCGG------CGCUuGG-GUAGGUGUUaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 55866 0.66 0.784021
Target:  5'- cCGCCGCGAcaACCaucguCGUCCAaccgguaAcgGCGGc -3'
miRNA:   3'- aGCGGCGCU--UGG-----GUAGGUg------UuaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 6986 0.66 0.784021
Target:  5'- gUCGgCGCG-ACUgAUCCGCAG-GCGc -3'
miRNA:   3'- -AGCgGCGCuUGGgUAGGUGUUaCGCu -5'
18077 3' -54.8 NC_004680.1 + 32537 0.66 0.784021
Target:  5'- aCGCaUGUGGACCCAUgCAaAGUGCu- -3'
miRNA:   3'- aGCG-GCGCUUGGGUAgGUgUUACGcu -5'
18077 3' -54.8 NC_004680.1 + 16015 0.66 0.77407
Target:  5'- gUGCUGCcAACCC-UCCGguGUGUGGu -3'
miRNA:   3'- aGCGGCGcUUGGGuAGGUguUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 42673 0.66 0.766005
Target:  5'- uUCGCCGCGGcugaugccgugccgcACCCucacccgugaCACuGUGCGGu -3'
miRNA:   3'- -AGCGGCGCU---------------UGGGuag-------GUGuUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 7101 0.66 0.763974
Target:  5'- gUCGuuGUGcgccGACCCGaacUCCACGAgaUGCGc -3'
miRNA:   3'- -AGCggCGC----UUGGGU---AGGUGUU--ACGCu -5'
18077 3' -54.8 NC_004680.1 + 9141 0.66 0.763974
Target:  5'- -aGuuGCuGGACCUGUUCGgGGUGCGGu -3'
miRNA:   3'- agCggCG-CUUGGGUAGGUgUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 37433 0.66 0.763974
Target:  5'- aUCGaCCaGCuGACCauCAUCCGCAAcGCGAu -3'
miRNA:   3'- -AGC-GG-CGcUUGG--GUAGGUGUUaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 1701 0.66 0.763974
Target:  5'- cCaCCGCG-ACCCGUCaaacccaGCAGUGaCGAa -3'
miRNA:   3'- aGcGGCGCuUGGGUAGg------UGUUAC-GCU- -5'
18077 3' -54.8 NC_004680.1 + 1618 0.66 0.763974
Target:  5'- aCGCCuGCGAGCCCGacuuacgCCACcGAUuaGAu -3'
miRNA:   3'- aGCGG-CGCUUGGGUa------GGUG-UUAcgCU- -5'
18077 3' -54.8 NC_004680.1 + 44482 0.66 0.763974
Target:  5'- -aGCCGCcAACCCcagcaguUCCACGAgggauaGCGGg -3'
miRNA:   3'- agCGGCGcUUGGGu------AGGUGUUa-----CGCU- -5'
18077 3' -54.8 NC_004680.1 + 36147 0.66 0.753743
Target:  5'- aCGCCG-GAcgcauCCCAUgcCCGCAGggcgGCGAg -3'
miRNA:   3'- aGCGGCgCUu----GGGUA--GGUGUUa---CGCU- -5'
18077 3' -54.8 NC_004680.1 + 50442 0.66 0.752713
Target:  5'- cCGCUGCGAuaccaauGCCCAU--ACAGggcgGCGAg -3'
miRNA:   3'- aGCGGCGCU-------UGGGUAggUGUUa---CGCU- -5'
18077 3' -54.8 NC_004680.1 + 11748 0.66 0.743389
Target:  5'- aCGaCCGgGGuucuuACCCGUCUGcCGGUGCGGc -3'
miRNA:   3'- aGC-GGCgCU-----UGGGUAGGU-GUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 15631 0.66 0.743389
Target:  5'- -gGCC-UGAACgguuuCCAUCCGCAcuGUGCGGg -3'
miRNA:   3'- agCGGcGCUUG-----GGUAGGUGU--UACGCU- -5'
18077 3' -54.8 NC_004680.1 + 29841 0.66 0.743389
Target:  5'- cUCG-CGUGAugCCG-CCACGcuUGCGAg -3'
miRNA:   3'- -AGCgGCGCUugGGUaGGUGUu-ACGCU- -5'
18077 3' -54.8 NC_004680.1 + 11305 0.66 0.732923
Target:  5'- aUCGUCGUaucugGAugCCcgCCACAAacugGCGGa -3'
miRNA:   3'- -AGCGGCG-----CUugGGuaGGUGUUa---CGCU- -5'
18077 3' -54.8 NC_004680.1 + 42823 0.66 0.732923
Target:  5'- cUGCCgGCGGuCCCAgCCACGAccggggaacuUGCGGc -3'
miRNA:   3'- aGCGG-CGCUuGGGUaGGUGUU----------ACGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.