miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18082 3' -56.3 NC_004680.1 + 25925 0.66 0.728582
Target:  5'- aGGGC-UCCGUgGucucGCCGUgguggcGGCCGCCg -3'
miRNA:   3'- -CCUGuGGGUAgUu---UGGCA------CCGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 10270 0.66 0.728582
Target:  5'- gGGGCAuCCCGUUG--UCGUGGCUGgCg -3'
miRNA:   3'- -CCUGU-GGGUAGUuuGGCACCGGCgGg -5'
18082 3' -56.3 NC_004680.1 + 39641 0.66 0.728582
Target:  5'- cGGCGCuCCAUgCAAAuggaaccucacCCGcaGCCGCCCg -3'
miRNA:   3'- cCUGUG-GGUA-GUUU-----------GGCacCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 10003 0.66 0.726508
Target:  5'- aGGGgACCgGUCGGGCCGgcaucgacgucGCUGCCg -3'
miRNA:   3'- -CCUgUGGgUAGUUUGGCac---------CGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 59262 0.66 0.72547
Target:  5'- -aACGCCUgAUCGAACgCGgcccgaaaguuagcUGGCgGCCCa -3'
miRNA:   3'- ccUGUGGG-UAGUUUG-GC--------------ACCGgCGGG- -5'
18082 3' -56.3 NC_004680.1 + 4214 0.66 0.718178
Target:  5'- cGGACAUCg--CAGACCGcGGCggaCGCgCCg -3'
miRNA:   3'- -CCUGUGGguaGUUUGGCaCCG---GCG-GG- -5'
18082 3' -56.3 NC_004680.1 + 747 0.66 0.718178
Target:  5'- uGGGCACCguUUggcuGGCCGUcGGCgGUUCg -3'
miRNA:   3'- -CCUGUGGguAGu---UUGGCA-CCGgCGGG- -5'
18082 3' -56.3 NC_004680.1 + 27677 0.66 0.718178
Target:  5'- cGGugAUCCGagAuGCCGgGGCgGCCa -3'
miRNA:   3'- -CCugUGGGUagUuUGGCaCCGgCGGg -5'
18082 3' -56.3 NC_004680.1 + 43620 0.66 0.718178
Target:  5'- cGGcCGCCCugGUCGAA-CGUGGCgGCg- -3'
miRNA:   3'- -CCuGUGGG--UAGUUUgGCACCGgCGgg -5'
18082 3' -56.3 NC_004680.1 + 33857 0.66 0.718178
Target:  5'- cGGACGCUgGUUGGcgugagguGCCGUuguuGCCGCCg -3'
miRNA:   3'- -CCUGUGGgUAGUU--------UGGCAc---CGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 3816 0.66 0.707694
Target:  5'- uGGCAgCCAUCGAcUCuugGGCCGCUUg -3'
miRNA:   3'- cCUGUgGGUAGUUuGGca-CCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 55121 0.66 0.707694
Target:  5'- uGGAC-CgCAUCGAagccaccccACCGUGGaccagaCGCUCa -3'
miRNA:   3'- -CCUGuGgGUAGUU---------UGGCACCg-----GCGGG- -5'
18082 3' -56.3 NC_004680.1 + 44033 0.66 0.707694
Target:  5'- gGGAUGCCCucggCGAAuCCGacUGGCUGCg- -3'
miRNA:   3'- -CCUGUGGGua--GUUU-GGC--ACCGGCGgg -5'
18082 3' -56.3 NC_004680.1 + 42132 0.66 0.707694
Target:  5'- uGACcCCCGUUGAgguggagaagguGgCGUGGCUGaCCCg -3'
miRNA:   3'- cCUGuGGGUAGUU------------UgGCACCGGC-GGG- -5'
18082 3' -56.3 NC_004680.1 + 34539 0.66 0.707694
Target:  5'- aGG-UGCCCcaGUCGuauCCGUcuGcGCCGCCCa -3'
miRNA:   3'- -CCuGUGGG--UAGUuu-GGCA--C-CGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 32220 0.66 0.707694
Target:  5'- cGGACAgaaCCAcCAgcAGCCuUGGCCGCgaCCa -3'
miRNA:   3'- -CCUGUg--GGUaGU--UUGGcACCGGCG--GG- -5'
18082 3' -56.3 NC_004680.1 + 12638 0.66 0.697138
Target:  5'- uGGCACCCGgc--GCUGgucaGGCCGCgCa -3'
miRNA:   3'- cCUGUGGGUaguuUGGCa---CCGGCGgG- -5'
18082 3' -56.3 NC_004680.1 + 31377 0.66 0.675856
Target:  5'- uGGCuucuuCCCAUCGuuucauguggaAAgCGUGGCCGCg- -3'
miRNA:   3'- cCUGu----GGGUAGU-----------UUgGCACCGGCGgg -5'
18082 3' -56.3 NC_004680.1 + 5191 0.66 0.675856
Target:  5'- uGGCACCUaccGUCAAggacuacaagGCCGcUGGCCGgCa -3'
miRNA:   3'- cCUGUGGG---UAGUU----------UGGC-ACCGGCgGg -5'
18082 3' -56.3 NC_004680.1 + 40907 0.67 0.665151
Target:  5'- cGGCgACCCG-CAcACCGUGGUaguCGCaCCa -3'
miRNA:   3'- cCUG-UGGGUaGUuUGGCACCG---GCG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.