miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18085 5' -64 NC_004680.1 + 27489 0.66 0.328807
Target:  5'- uUGGCGUugcccacggACCaGGCAGCacgGUCGGuGUCGa -3'
miRNA:   3'- -ACCGCG---------UGG-CCGUCGg--UAGCC-CGGCg -5'
18085 5' -64 NC_004680.1 + 42740 0.66 0.328807
Target:  5'- aGGagGCGCCGucGUcgAGCaggCGGGCCGCc -3'
miRNA:   3'- aCCg-CGUGGC--CG--UCGguaGCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 53242 0.66 0.328807
Target:  5'- uUGGUGCAgCGGCAgggcaacuGCUGUUGGaacGCCGa -3'
miRNA:   3'- -ACCGCGUgGCCGU--------CGGUAGCC---CGGCg -5'
18085 5' -64 NC_004680.1 + 20887 0.66 0.3273
Target:  5'- --aCGCGCCGGCAGCgucgaggaaguUCGGGuuGa -3'
miRNA:   3'- accGCGUGGCCGUCGgu---------AGCCCggCg -5'
18085 5' -64 NC_004680.1 + 5215 0.66 0.32132
Target:  5'- aGGcCGCugGCCGGCAGaCC-UCGGcGgaCGCg -3'
miRNA:   3'- aCC-GCG--UGGCCGUC-GGuAGCC-Cg-GCG- -5'
18085 5' -64 NC_004680.1 + 3714 0.66 0.32132
Target:  5'- cGGUgGCACCGGUuguccaagcGGCCcaagaGUCGauGGCUGCc -3'
miRNA:   3'- aCCG-CGUGGCCG---------UCGG-----UAGC--CCGGCG- -5'
18085 5' -64 NC_004680.1 + 16659 0.66 0.32132
Target:  5'- cUGGCGCGgCGauccuccaguuGCGGCCGcaGGGCgGUa -3'
miRNA:   3'- -ACCGCGUgGC-----------CGUCGGUagCCCGgCG- -5'
18085 5' -64 NC_004680.1 + 17129 0.66 0.31396
Target:  5'- cGGuCGuCACCGGUgagggAGCCGauguUCGGGuuGa -3'
miRNA:   3'- aCC-GC-GUGGCCG-----UCGGU----AGCCCggCg -5'
18085 5' -64 NC_004680.1 + 238 0.66 0.31396
Target:  5'- cGGUGCGCUGGUGGaaugaCAUUuGGGCguCGCc -3'
miRNA:   3'- aCCGCGUGGCCGUCg----GUAG-CCCG--GCG- -5'
18085 5' -64 NC_004680.1 + 56804 0.66 0.31396
Target:  5'- uUGcGCGUccaaccauuGCCGGUAGgCGUUGgGGCUGUg -3'
miRNA:   3'- -AC-CGCG---------UGGCCGUCgGUAGC-CCGGCG- -5'
18085 5' -64 NC_004680.1 + 6007 0.66 0.306729
Target:  5'- gGGCGgguguucacCACCGG-GGCCAcUCGGGUgcgggCGCa -3'
miRNA:   3'- aCCGC---------GUGGCCgUCGGU-AGCCCG-----GCG- -5'
18085 5' -64 NC_004680.1 + 28338 0.66 0.306729
Target:  5'- cGGCGCG--GGCGGUgucggCGUCGgGGCCGa -3'
miRNA:   3'- aCCGCGUggCCGUCG-----GUAGC-CCGGCg -5'
18085 5' -64 NC_004680.1 + 43747 0.66 0.306729
Target:  5'- gGGCaCACCGcGC-GUCAUCaaGGGCgGCu -3'
miRNA:   3'- aCCGcGUGGC-CGuCGGUAG--CCCGgCG- -5'
18085 5' -64 NC_004680.1 + 44210 0.66 0.306729
Target:  5'- -aGCGagaagAgCGGCAGCCAguucgCGGGCCu- -3'
miRNA:   3'- acCGCg----UgGCCGUCGGUa----GCCCGGcg -5'
18085 5' -64 NC_004680.1 + 25356 0.66 0.299626
Target:  5'- cGGCGUcaaGCuCGGCGGUaGUCGcGGCgCGUu -3'
miRNA:   3'- aCCGCG---UG-GCCGUCGgUAGC-CCG-GCG- -5'
18085 5' -64 NC_004680.1 + 11183 0.66 0.299626
Target:  5'- cGGCGUucuGCUugGGC-GCCG--GGGCCGCc -3'
miRNA:   3'- aCCGCG---UGG--CCGuCGGUagCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 35353 0.66 0.298923
Target:  5'- gUGGaGCAUCGaGCauucgaagcguugAGCCGcgGGGCCGCg -3'
miRNA:   3'- -ACCgCGUGGC-CG-------------UCGGUagCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 7442 0.66 0.292651
Target:  5'- cGGC-CACUugGuGCGGCaugUGGGCCGCu -3'
miRNA:   3'- aCCGcGUGG--C-CGUCGguaGCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 32385 0.66 0.292651
Target:  5'- cUGGUccGCGCCauuucguGCGGCCGUCgucgcugcGGGCgCGCa -3'
miRNA:   3'- -ACCG--CGUGGc------CGUCGGUAG--------CCCG-GCG- -5'
18085 5' -64 NC_004680.1 + 53876 0.66 0.292651
Target:  5'- gGGCuGCACCu---GCC-UCGGuGCCGCa -3'
miRNA:   3'- aCCG-CGUGGccguCGGuAGCC-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.