miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18193 5' -63.2 NC_004680.1 + 21346 0.66 0.407142
Target:  5'- uGGCGCuacCGACACCaGCCC-CGgCCGaCGa -3'
miRNA:   3'- gCUGCG---GCUGUGG-CGGGcGC-GGCaGC- -5'
18193 5' -63.2 NC_004680.1 + 42737 0.66 0.406281
Target:  5'- aGGCGCCGucgucgagcaggcGgGCCGCCUGgGCCa--- -3'
miRNA:   3'- gCUGCGGC-------------UgUGGCGGGCgCGGcagc -5'
18193 5' -63.2 NC_004680.1 + 16763 0.66 0.398592
Target:  5'- -aACaCCGAUACCGCCCuGCgGCCG-Ca -3'
miRNA:   3'- gcUGcGGCUGUGGCGGG-CG-CGGCaGc -5'
18193 5' -63.2 NC_004680.1 + 38857 0.66 0.398592
Target:  5'- cCGGCGCgGGgggcgggggaACCauGCCCGCGCCGg-- -3'
miRNA:   3'- -GCUGCGgCUg---------UGG--CGGGCGCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 53009 0.66 0.390158
Target:  5'- -aACGCCGAUgaAUUGCCCaGCGauGUCGg -3'
miRNA:   3'- gcUGCGGCUG--UGGCGGG-CGCggCAGC- -5'
18193 5' -63.2 NC_004680.1 + 8795 0.66 0.381841
Target:  5'- cCGGCGgaGAC-CCGuCCCgGCGCgGUCa -3'
miRNA:   3'- -GCUGCggCUGuGGC-GGG-CGCGgCAGc -5'
18193 5' -63.2 NC_004680.1 + 22410 0.66 0.373644
Target:  5'- cCGAacuCGCgGuaAUACCGCuCCGCGCCGg-- -3'
miRNA:   3'- -GCU---GCGgC--UGUGGCG-GGCGCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 34481 0.66 0.373644
Target:  5'- gCGAUGCUGACgAUCGCCCacguGCaGCCGg-- -3'
miRNA:   3'- -GCUGCGGCUG-UGGCGGG----CG-CGGCagc -5'
18193 5' -63.2 NC_004680.1 + 16361 0.66 0.364765
Target:  5'- -cACGCCccaacgcauacugGGCACCGUugcggaacugcaCCGuCGCCGUCGu -3'
miRNA:   3'- gcUGCGG-------------CUGUGGCG------------GGC-GCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 17878 0.67 0.357611
Target:  5'- aGACGCCGAacauuCUGCCUGCcCCGa-- -3'
miRNA:   3'- gCUGCGGCUgu---GGCGGGCGcGGCagc -5'
18193 5' -63.2 NC_004680.1 + 20748 0.67 0.357611
Target:  5'- uGGcCGCCGAucgggccuguucCGCCGCCaGCGUCGaUCGc -3'
miRNA:   3'- gCU-GCGGCU------------GUGGCGGgCGCGGC-AGC- -5'
18193 5' -63.2 NC_004680.1 + 42744 0.67 0.349777
Target:  5'- uCGugGCUGGgACCGCCggcagUGCGCUGa-- -3'
miRNA:   3'- -GCugCGGCUgUGGCGG-----GCGCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 41744 0.67 0.342066
Target:  5'- --cCGCCGACcCCGCCCGcCGCa-UCu -3'
miRNA:   3'- gcuGCGGCUGuGGCGGGC-GCGgcAGc -5'
18193 5' -63.2 NC_004680.1 + 25378 0.67 0.334479
Target:  5'- aCGGCaucacuugGCaCGACAUCGgCCGCGCCcUCa -3'
miRNA:   3'- -GCUG--------CG-GCUGUGGCgGGCGCGGcAGc -5'
18193 5' -63.2 NC_004680.1 + 22139 0.67 0.334479
Target:  5'- ----cCCGACGCCGCgCGCGCaGUCu -3'
miRNA:   3'- gcugcGGCUGUGGCGgGCGCGgCAGc -5'
18193 5' -63.2 NC_004680.1 + 24622 0.67 0.327016
Target:  5'- uGGCGCCGcCACCGCCaccacCGCC-UCc -3'
miRNA:   3'- gCUGCGGCuGUGGCGGgc---GCGGcAGc -5'
18193 5' -63.2 NC_004680.1 + 53915 0.67 0.327016
Target:  5'- -aAUGCUGGCACCcucacguucucGCCgGCGuuGUCGc -3'
miRNA:   3'- gcUGCGGCUGUGG-----------CGGgCGCggCAGC- -5'
18193 5' -63.2 NC_004680.1 + 28966 0.67 0.327016
Target:  5'- uCGACGCCGccgaacGCGCgGCCCGCa-CGUUc -3'
miRNA:   3'- -GCUGCGGC------UGUGgCGGGCGcgGCAGc -5'
18193 5' -63.2 NC_004680.1 + 6613 0.67 0.327016
Target:  5'- uCGAUGuuGACcuguacuuGCCGCCCGguuCGCCGg-- -3'
miRNA:   3'- -GCUGCggCUG--------UGGCGGGC---GCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 40886 0.67 0.327016
Target:  5'- ---aGUgGAcCACCGCCCGCGgCGUgGa -3'
miRNA:   3'- gcugCGgCU-GUGGCGGGCGCgGCAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.