miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18239 5' -53.8 NC_004680.1 + 41895 0.65 0.85058
Target:  5'- aCCGGCacgguucACCGAGAAgaaugcuugcagUGCGgugagguguucGAACCGGuCa -3'
miRNA:   3'- -GGCCG-------UGGCUCUU------------GCGU-----------UUUGGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 55176 0.65 0.848031
Target:  5'- cCCGGaACCGuGGAACGCuacugaccuguACCGGcCa -3'
miRNA:   3'- -GGCCgUGGC-UCUUGCGuuu--------UGGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 56828 0.66 0.842874
Target:  5'- aCCGGCACCGcccuAGAauucgGCGUAGGAaCaGGCa -3'
miRNA:   3'- -GGCCGUGGC----UCU-----UGCGUUUUgGcCUG- -5'
18239 5' -53.8 NC_004680.1 + 5224 0.66 0.842874
Target:  5'- gCCGGCAgaccUCGGcGGACGCGAuuuccgacACCGG-Cg -3'
miRNA:   3'- -GGCCGU----GGCU-CUUGCGUUu-------UGGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 23589 0.66 0.842874
Target:  5'- cCUGGUGCCGAGGgguuugcggGCGCA--GCCcuaGGAg -3'
miRNA:   3'- -GGCCGUGGCUCU---------UGCGUuuUGG---CCUg -5'
18239 5' -53.8 NC_004680.1 + 2783 0.66 0.841137
Target:  5'- cUCGGCAUCGAGGucccgccaccacCGCAu-AgCGGACc -3'
miRNA:   3'- -GGCCGUGGCUCUu-----------GCGUuuUgGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 22793 0.66 0.837637
Target:  5'- -aGGCgGCCGAGucgucguuucguuCGCcaacauggGGAACCGGACa -3'
miRNA:   3'- ggCCG-UGGCUCuu-----------GCG--------UUUUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 30290 0.66 0.834103
Target:  5'- aCCGGgGCgCGAugGAACGU---GCCGuGACa -3'
miRNA:   3'- -GGCCgUG-GCU--CUUGCGuuuUGGC-CUG- -5'
18239 5' -53.8 NC_004680.1 + 21707 0.66 0.825122
Target:  5'- cCCGGCcccgGCCGAGAACGCcu-GCa--GCg -3'
miRNA:   3'- -GGCCG----UGGCUCUUGCGuuuUGgccUG- -5'
18239 5' -53.8 NC_004680.1 + 52200 0.66 0.825122
Target:  5'- gCCGGCaaGCCGAcGAGCcaGGAGgCGGAUa -3'
miRNA:   3'- -GGCCG--UGGCU-CUUGcgUUUUgGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 34971 0.66 0.825122
Target:  5'- aCCaGCACCGGucaccccuCGCA--ACCGGAUg -3'
miRNA:   3'- -GGcCGUGGCUcuu-----GCGUuuUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 44054 0.66 0.825122
Target:  5'- aCUGGCugCGGGuuAACGgGu--UCGGACa -3'
miRNA:   3'- -GGCCGugGCUC--UUGCgUuuuGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 34885 0.66 0.81594
Target:  5'- uCCGGUugCGAGGG-GU--GACCGGuGCu -3'
miRNA:   3'- -GGCCGugGCUCUUgCGuuUUGGCC-UG- -5'
18239 5' -53.8 NC_004680.1 + 17213 0.66 0.81594
Target:  5'- aUCGGCucccucACCGGuGACGaccguguAACCGGACa -3'
miRNA:   3'- -GGCCG------UGGCUcUUGCguu----UUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 34448 0.66 0.81594
Target:  5'- aCCGGCACaaucAACGgGGAucACCGGAUc -3'
miRNA:   3'- -GGCCGUGgcucUUGCgUUU--UGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 47308 0.66 0.814081
Target:  5'- gCUGGCAguccaggUUGAGAAgcucaccCGCGAgggacAGCCGGACg -3'
miRNA:   3'- -GGCCGU-------GGCUCUU-------GCGUU-----UUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 51764 0.66 0.810339
Target:  5'- gCGGCggucauucgugcaucACCGAGGuauGCGCGGAccuucCCGGAg -3'
miRNA:   3'- gGCCG---------------UGGCUCU---UGCGUUUu----GGCCUg -5'
18239 5' -53.8 NC_004680.1 + 31871 0.66 0.806567
Target:  5'- -aGGCACCuGGGGgaguGCGC---ACCGGAa -3'
miRNA:   3'- ggCCGUGG-CUCU----UGCGuuuUGGCCUg -5'
18239 5' -53.8 NC_004680.1 + 57710 0.66 0.806567
Target:  5'- gCGGCugCGGGuucgaguCGguGuucCCGGACg -3'
miRNA:   3'- gGCCGugGCUCuu-----GCguUuu-GGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 27840 0.66 0.806567
Target:  5'- cUCGGCgGCCGGacGGugGUGGAcgcGCUGGGCg -3'
miRNA:   3'- -GGCCG-UGGCU--CUugCGUUU---UGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.