miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18245 3' -60.4 NC_004680.1 + 27021 0.66 0.439412
Target:  5'- --aGGCGCGCCGCCAacaaccccAGG-UugGCCGg -3'
miRNA:   3'- uacCCGUGCGGUGGU--------UCCgGugUGGU- -5'
18245 3' -60.4 NC_004680.1 + 27304 0.66 0.439412
Target:  5'- gGUGGGCuuGCCGCUgcGGgCGCugUu -3'
miRNA:   3'- -UACCCGugCGGUGGuuCCgGUGugGu -5'
18245 3' -60.4 NC_004680.1 + 37579 0.66 0.420607
Target:  5'- gAUGGGcCACGuUCAaaGAGGCCGCGUCAu -3'
miRNA:   3'- -UACCC-GUGC-GGUggUUCCGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 23493 0.66 0.411389
Target:  5'- -gGGGCAgGCC-CC--GGCCACugUg -3'
miRNA:   3'- uaCCCGUgCGGuGGuuCCGGUGugGu -5'
18245 3' -60.4 NC_004680.1 + 11082 0.66 0.411389
Target:  5'- gAUGGGgAgGCCgguAUCAGGGUCGCuGCCGa -3'
miRNA:   3'- -UACCCgUgCGG---UGGUUCCGGUG-UGGU- -5'
18245 3' -60.4 NC_004680.1 + 12268 0.66 0.405918
Target:  5'- -gGGGCGgcuacCGCCACCGucggaacggauaccuGGGCggcaGCGCCGg -3'
miRNA:   3'- uaCCCGU-----GCGGUGGU---------------UCCGg---UGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 14156 0.66 0.402297
Target:  5'- -gGuGGCGCGUugauCACUcAGGCgACACCAg -3'
miRNA:   3'- uaC-CCGUGCG----GUGGuUCCGgUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 30684 0.66 0.402297
Target:  5'- cGUGGGUGCGaCugUGAGGCCG-GCCGa -3'
miRNA:   3'- -UACCCGUGCgGugGUUCCGGUgUGGU- -5'
18245 3' -60.4 NC_004680.1 + 39861 0.66 0.402297
Target:  5'- -aGGGaGCGCCGCagaGAGcGCCGCAUgGa -3'
miRNA:   3'- uaCCCgUGCGGUGg--UUC-CGGUGUGgU- -5'
18245 3' -60.4 NC_004680.1 + 31654 0.66 0.402297
Target:  5'- aGUGGuGCACauCUACCAGcguGGCgACACCAg -3'
miRNA:   3'- -UACC-CGUGc-GGUGGUU---CCGgUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 2468 0.66 0.402297
Target:  5'- uUGGuGCGCGCCucacgcugaaACgAAcGCCACGCCGc -3'
miRNA:   3'- uACC-CGUGCGG----------UGgUUcCGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 13142 0.66 0.393333
Target:  5'- gAUGGGCG-GCCuggcgguccccgACCGGaccGCCGCACCAg -3'
miRNA:   3'- -UACCCGUgCGG------------UGGUUc--CGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 42680 0.67 0.384501
Target:  5'- uGUGGGCuuCGCCgcggcugauGCCGu-GCCGCACCc -3'
miRNA:   3'- -UACCCGu-GCGG---------UGGUucCGGUGUGGu -5'
18245 3' -60.4 NC_004680.1 + 40485 0.67 0.384501
Target:  5'- --cGGCGCGguCCGCUAGGGCCugGUCAa -3'
miRNA:   3'- uacCCGUGC--GGUGGUUCCGGugUGGU- -5'
18245 3' -60.4 NC_004680.1 + 40019 0.67 0.384501
Target:  5'- -cGGGC-CGUCACCc---CCACGCCAg -3'
miRNA:   3'- uaCCCGuGCGGUGGuuccGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 28649 0.67 0.3758
Target:  5'- gGUGGcGCgacuACGCaCACCAAGGCgacuugUACGCCu -3'
miRNA:   3'- -UACC-CG----UGCG-GUGGUUCCG------GUGUGGu -5'
18245 3' -60.4 NC_004680.1 + 13852 0.67 0.3758
Target:  5'- uGUGGGCGCGCau---GGGCCGCGaCAg -3'
miRNA:   3'- -UACCCGUGCGgugguUCCGGUGUgGU- -5'
18245 3' -60.4 NC_004680.1 + 28316 0.67 0.3758
Target:  5'- -gGGGC-CGauCCACCAGGGa-ACACCGg -3'
miRNA:   3'- uaCCCGuGC--GGUGGUUCCggUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 12341 0.67 0.3758
Target:  5'- uUGGGCGggccaguuCGUCACCGAcaccGGaaCCACGCCAc -3'
miRNA:   3'- uACCCGU--------GCGGUGGUU----CC--GGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 20874 0.67 0.358803
Target:  5'- -cGGGacaACGCCAU--GGGCCuguCACCGg -3'
miRNA:   3'- uaCCCg--UGCGGUGguUCCGGu--GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.