miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18246 3' -56.8 NC_004680.1 + 40084 0.66 0.673109
Target:  5'- cGGCCCGcuGCgucaGCCGuaGA--UCCGCGCCa -3'
miRNA:   3'- -UUGGGU--UG----UGGCcgCUugAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 13409 0.66 0.673109
Target:  5'- cACCCAcgacaugggGCACUGGUGGGCaCCGgucCGCUg -3'
miRNA:   3'- uUGGGU---------UGUGGCCGCUUGaGGU---GCGG- -5'
18246 3' -56.8 NC_004680.1 + 50743 0.66 0.673109
Target:  5'- gAGCCCugAACACC-GCGAucguGCUUgGCGCg -3'
miRNA:   3'- -UUGGG--UUGUGGcCGCU----UGAGgUGCGg -5'
18246 3' -56.8 NC_004680.1 + 19395 0.66 0.673109
Target:  5'- cACCCAguucgGCACCGG-GAACaccguggCCGCgguGCCa -3'
miRNA:   3'- uUGGGU-----UGUGGCCgCUUGa------GGUG---CGG- -5'
18246 3' -56.8 NC_004680.1 + 12712 0.66 0.662297
Target:  5'- --aCCAGCGCCgGGUGccaucgcguccAGCgCCAUGCCg -3'
miRNA:   3'- uugGGUUGUGG-CCGC-----------UUGaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 23372 0.66 0.662297
Target:  5'- cGCCCccgaACCGGacacCUCCACGUCa -3'
miRNA:   3'- uUGGGuug-UGGCCgcuuGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 1624 0.66 0.662297
Target:  5'- uAUCgAACGCCuGCGAGC-CCgacuuACGCCa -3'
miRNA:   3'- uUGGgUUGUGGcCGCUUGaGG-----UGCGG- -5'
18246 3' -56.8 NC_004680.1 + 34498 0.66 0.659048
Target:  5'- cAUCCGGCACCGuacgcGCGAACaUCCaacccgauggugucGCGUCg -3'
miRNA:   3'- uUGGGUUGUGGC-----CGCUUG-AGG--------------UGCGG- -5'
18246 3' -56.8 NC_004680.1 + 35082 0.66 0.659048
Target:  5'- uGCCCGGCGCaacguccauguuguUGGCGGACacucgUCCAuCGCg -3'
miRNA:   3'- uUGGGUUGUG--------------GCCGCUUG-----AGGU-GCGg -5'
18246 3' -56.8 NC_004680.1 + 26796 0.66 0.655796
Target:  5'- cGGCaCCGGCAUCGGCGAugaCCGCaagugguggugccccGCCa -3'
miRNA:   3'- -UUG-GGUUGUGGCCGCUugaGGUG---------------CGG- -5'
18246 3' -56.8 NC_004680.1 + 35632 0.66 0.651457
Target:  5'- uGCCgAcCugCGGCGAugUCgACGUUu -3'
miRNA:   3'- uUGGgUuGugGCCGCUugAGgUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 33626 0.66 0.651457
Target:  5'- cGCCCGucaggaaACCGGCGGcgaUCCGCaCCg -3'
miRNA:   3'- uUGGGUug-----UGGCCGCUug-AGGUGcGG- -5'
18246 3' -56.8 NC_004680.1 + 896 0.66 0.6406
Target:  5'- aAAUCC-ACGCC-GCGAACUCggucuuggcUACGCCc -3'
miRNA:   3'- -UUGGGuUGUGGcCGCUUGAG---------GUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 21418 0.66 0.6406
Target:  5'- gGGCUgAGC-CCGcGCGGuC-CCACGCCa -3'
miRNA:   3'- -UUGGgUUGuGGC-CGCUuGaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 9639 0.66 0.6406
Target:  5'- gGGCCgUAACGCUGGUGAGCaguugUCGCGUg -3'
miRNA:   3'- -UUGG-GUUGUGGCCGCUUGa----GGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 28689 0.66 0.6406
Target:  5'- cACCgAAC-CCGGCGAcacacaagaGgUCCgcaACGCCa -3'
miRNA:   3'- uUGGgUUGuGGCCGCU---------UgAGG---UGCGG- -5'
18246 3' -56.8 NC_004680.1 + 42165 0.66 0.6406
Target:  5'- uGACCC-GCAUgGGuUGGACcgCCACGCa -3'
miRNA:   3'- -UUGGGuUGUGgCC-GCUUGa-GGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 12340 0.66 0.629735
Target:  5'- gGugCC-GCGCCGGgGAGuC-CCGCGUCu -3'
miRNA:   3'- -UugGGuUGUGGCCgCUU-GaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 19685 0.66 0.629735
Target:  5'- aAACCCuuCAgCGGU--ACccgCCGCGCCg -3'
miRNA:   3'- -UUGGGuuGUgGCCGcuUGa--GGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 59367 0.66 0.628649
Target:  5'- -cCCCAGCAaccccccCCGGgGGGgUCUGCGCg -3'
miRNA:   3'- uuGGGUUGU-------GGCCgCUUgAGGUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.