miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18250 5' -61.2 NC_004681.1 + 29578 0.66 0.53258
Target:  5'- aGguGGuCCCGGUgAGGgacagGGUgaccgacuCACCGCCc -3'
miRNA:   3'- cCguCC-GGGCUA-UCCa----CCG--------GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 59282 0.66 0.53258
Target:  5'- cGGgAGGCCguccgUGAcaUAGGUGGCgACguaggUGCCg -3'
miRNA:   3'- -CCgUCCGG-----GCU--AUCCACCGgUG-----GCGG- -5'
18250 5' -61.2 NC_004681.1 + 48670 0.66 0.53258
Target:  5'- gGGCGuGGCCCacGAUgcagcagggcuGGGU-GCUGCCGUCg -3'
miRNA:   3'- -CCGU-CCGGG--CUA-----------UCCAcCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 18344 0.66 0.53258
Target:  5'- uGGCGGGCUCGGguucacccccGGUGgcGCCAUCGaCa -3'
miRNA:   3'- -CCGUCCGGGCUau--------CCAC--CGGUGGCgG- -5'
18250 5' -61.2 NC_004681.1 + 18122 0.66 0.53258
Target:  5'- cGGcCAGGCaCCGGgucAGGUcGGCCcguuccccaCGCCc -3'
miRNA:   3'- -CC-GUCCG-GGCUa--UCCA-CCGGug-------GCGG- -5'
18250 5' -61.2 NC_004681.1 + 12649 0.66 0.522645
Target:  5'- gGGCugacGGCgUgGAUGGG-GGCacccccauCACCGCCg -3'
miRNA:   3'- -CCGu---CCG-GgCUAUCCaCCG--------GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 62507 0.66 0.522645
Target:  5'- uGGCccAGGCC--AUGGGcacccUGGCaGCCGCCu -3'
miRNA:   3'- -CCG--UCCGGgcUAUCC-----ACCGgUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 18466 0.66 0.512781
Target:  5'- uGGCcuGCCauguCGAUggcgccaccggGGGUGaacccgagcccGCCACCGCCa -3'
miRNA:   3'- -CCGucCGG----GCUA-----------UCCAC-----------CGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 30361 0.66 0.512781
Target:  5'- cGguGGUCuCGAcgccGUaccGGCCGCCGCCg -3'
miRNA:   3'- cCguCCGG-GCUauc-CA---CCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 65349 0.66 0.512781
Target:  5'- aGGCAGGCgaUGGcuuucacgAGGUgcggcaGGCCGCUGUCg -3'
miRNA:   3'- -CCGUCCGg-GCUa-------UCCA------CCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 1747 0.66 0.512781
Target:  5'- cGGguGGa-CGAUacccAGGUaguuccccaGGCCAUCGCCc -3'
miRNA:   3'- -CCguCCggGCUA----UCCA---------CCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 16617 0.66 0.512781
Target:  5'- uGCAGGCCgCGAUggAGGcGGCgggCAUCaGCCc -3'
miRNA:   3'- cCGUCCGG-GCUA--UCCaCCG---GUGG-CGG- -5'
18250 5' -61.2 NC_004681.1 + 23552 0.66 0.503969
Target:  5'- uGGCGGcGCCCGAcccaucagaacugcgGGaGUGGCCGagGUCg -3'
miRNA:   3'- -CCGUC-CGGGCUa--------------UC-CACCGGUggCGG- -5'
18250 5' -61.2 NC_004681.1 + 66738 0.66 0.502995
Target:  5'- cGguGGCCaaugcgcagaaGGccGGUGGCaaCGCCGCCu -3'
miRNA:   3'- cCguCCGGg----------CUauCCACCG--GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 60574 0.66 0.502995
Target:  5'- cGCuGGCCgaCGAacguGGUgcucgacgaGGCCGCCGCUg -3'
miRNA:   3'- cCGuCCGG--GCUau--CCA---------CCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 7369 0.66 0.502994
Target:  5'- cGGCGcacucGGCgCCGA--GGUGGaCgGCCGCg -3'
miRNA:   3'- -CCGU-----CCG-GGCUauCCACC-GgUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 64482 0.66 0.49329
Target:  5'- -aCAGGa-CGAUGccGGUGGCCAUUGUCg -3'
miRNA:   3'- ccGUCCggGCUAU--CCACCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 50567 0.66 0.49329
Target:  5'- cGCAGGacaCGGUcgGGGUGGgCGUCGCCc -3'
miRNA:   3'- cCGUCCgg-GCUA--UCCACCgGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 57569 0.66 0.492325
Target:  5'- aGGacaaGGGCaaGucucAGGUGGCCAgccugggaaccguCCGCCg -3'
miRNA:   3'- -CCg---UCCGggCua--UCCACCGGU-------------GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 46410 0.66 0.483673
Target:  5'- uGCcuGGCCCacGAUgcAGGaUGGCUGcCCGCCg -3'
miRNA:   3'- cCGu-CCGGG--CUA--UCC-ACCGGU-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.