miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 44137 0.66 0.473601
Target:  5'- aGGccGCgGGCCugGCCCUCaC-CGGCCGCg -3'
miRNA:   3'- gCCa-CG-CCGG--CGGGAG-GuGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 37675 0.66 0.473601
Target:  5'- ---aGCGGCCGCgcgucgcuUCUCCAauuCCGCCa -3'
miRNA:   3'- gccaCGCCGGCG--------GGAGGUgcuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 25350 0.66 0.464338
Target:  5'- ---aGCGcacccaaccGCCGCCgCgggcgCCAUGGCCGCCg -3'
miRNA:   3'- gccaCGC---------CGGCGG-Ga----GGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 40241 0.66 0.464338
Target:  5'- gCGGcgucGCGGCCuGCCUgUCCcggGCGGUCACCg -3'
miRNA:   3'- -GCCa---CGCCGG-CGGG-AGG---UGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 69105 0.66 0.464338
Target:  5'- uGGUGUGaagcGCCGCCUcgcCCGCGcCCugGCCu -3'
miRNA:   3'- gCCACGC----CGGCGGGa--GGUGCuGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 51030 0.66 0.464338
Target:  5'- aGG-GCGucaUCGCCCUCgGCGACgGCg -3'
miRNA:   3'- gCCaCGCc--GGCGGGAGgUGCUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 38214 0.66 0.464338
Target:  5'- uGGgGCGGCCGaagaCgUcCCGCGGCggCGCCa -3'
miRNA:   3'- gCCaCGCCGGCg---GgA-GGUGCUG--GUGG- -5'
18251 3' -62.8 NC_004681.1 + 45593 0.66 0.455171
Target:  5'- ---gGUGGCCGgugccUCCUCCGCGuCgGCCa -3'
miRNA:   3'- gccaCGCCGGC-----GGGAGGUGCuGgUGG- -5'
18251 3' -62.8 NC_004681.1 + 55979 0.66 0.446103
Target:  5'- cCGGUGCucGGCUgccagGCCCUCacgcagCGCGA-CGCCa -3'
miRNA:   3'- -GCCACG--CCGG-----CGGGAG------GUGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 9751 0.66 0.446103
Target:  5'- aGGUGaccCGGCC-CCCUCacgaACGucaGCUACCu -3'
miRNA:   3'- gCCAC---GCCGGcGGGAGg---UGC---UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 35148 0.66 0.446103
Target:  5'- --cUGUGGuuGCCgUCCGCGGCgAgCa -3'
miRNA:   3'- gccACGCCggCGGgAGGUGCUGgUgG- -5'
18251 3' -62.8 NC_004681.1 + 38331 0.66 0.446103
Target:  5'- aCGGUGCcuauggcGCCGCCgCgggacgUCUuCGGCCGCCc -3'
miRNA:   3'- -GCCACGc------CGGCGG-G------AGGuGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 6010 0.66 0.440711
Target:  5'- aGGUcuGCGGCgucuacgacauCGCCCcucccaucguccacaUCCugGACCguGCCa -3'
miRNA:   3'- gCCA--CGCCG-----------GCGGG---------------AGGugCUGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 47460 0.66 0.437137
Target:  5'- aCGaGUGCcaucaGGUCGCCgCgugCgACGGCCACUa -3'
miRNA:   3'- -GC-CACG-----CCGGCGG-Ga--GgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 3640 0.66 0.437137
Target:  5'- ---aGCaGGCCGCCCUCgCcuucgACGucGCCGCCc -3'
miRNA:   3'- gccaCG-CCGGCGGGAG-G-----UGC--UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 67347 0.66 0.437137
Target:  5'- gCGGUGCGGCggggccagcuUGUUCUUgACGACuuuCACCc -3'
miRNA:   3'- -GCCACGCCG----------GCGGGAGgUGCUG---GUGG- -5'
18251 3' -62.8 NC_004681.1 + 49455 0.66 0.437137
Target:  5'- aGGUGUGcGCCcaguggucagcGCCCgCgGCG-CCGCCg -3'
miRNA:   3'- gCCACGC-CGG-----------CGGGaGgUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 49311 0.66 0.434467
Target:  5'- gCGG-GCGGucugcacaaccucaCCGUCCgCCACGGCggCGCCg -3'
miRNA:   3'- -GCCaCGCC--------------GGCGGGaGGUGCUG--GUGG- -5'
18251 3' -62.8 NC_004681.1 + 44582 0.66 0.428275
Target:  5'- ---cGCcGCCGCgCU-CGCGGCCGCCg -3'
miRNA:   3'- gccaCGcCGGCGgGAgGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 5890 0.66 0.428275
Target:  5'- uGGgGCGGCCaGCguuCUUCCAC-AUCGCCg -3'
miRNA:   3'- gCCaCGCCGG-CG---GGAGGUGcUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.