miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18254 3' -54.5 NC_004681.1 + 39889 0.66 0.809606
Target:  5'- cAGGCG----GGCGGAGacccccagcGCGCGgCCAGCu -3'
miRNA:   3'- -UCCGCgauuUCGUCUU---------CGCGC-GGUUG- -5'
18254 3' -54.5 NC_004681.1 + 24983 0.66 0.809606
Target:  5'- cGGGgGCUcuGGCGGcacAGGCGuCGgCGGCa -3'
miRNA:   3'- -UCCgCGAuuUCGUC---UUCGC-GCgGUUG- -5'
18254 3' -54.5 NC_004681.1 + 33673 0.66 0.808657
Target:  5'- -uGCGCUucgccgcgggaguGAAGCGcucGAAGagcgGCGCCAACa -3'
miRNA:   3'- ucCGCGA-------------UUUCGU---CUUCg---CGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 23789 0.66 0.80003
Target:  5'- cGGGCcacucuauguccGCgGAGGCGGgcGCGUaggagGCCAGCu -3'
miRNA:   3'- -UCCG------------CGaUUUCGUCuuCGCG-----CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 39890 0.66 0.80003
Target:  5'- gAGGCGUggGAGGCgauGGucGCGCgGCgGGCg -3'
miRNA:   3'- -UCCGCGa-UUUCG---UCuuCGCG-CGgUUG- -5'
18254 3' -54.5 NC_004681.1 + 3092 0.66 0.794198
Target:  5'- cGGCGCcAAGcacgucccGCAGGAcuaccugaucggaucGCGCGcCCAGCg -3'
miRNA:   3'- uCCGCGaUUU--------CGUCUU---------------CGCGC-GGUUG- -5'
18254 3' -54.5 NC_004681.1 + 46880 0.66 0.794198
Target:  5'- cGGCGC----GCGGGAugaccgugacgccguGCGCGCgCAGCg -3'
miRNA:   3'- uCCGCGauuuCGUCUU---------------CGCGCG-GUUG- -5'
18254 3' -54.5 NC_004681.1 + 62556 0.66 0.790276
Target:  5'- cGGUGUcauccaggagaUGGAacGcCGGGAGCGCGCCGAg -3'
miRNA:   3'- uCCGCG-----------AUUU--C-GUCUUCGCGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 29854 0.66 0.790276
Target:  5'- uGGCaGCagGucGCGGAAGCGC-UCGACa -3'
miRNA:   3'- uCCG-CGa-UuuCGUCUUCGCGcGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 53642 0.66 0.789291
Target:  5'- cGGCGCccuGGuCGGugucgucauccacAAGCGCGCCGGa -3'
miRNA:   3'- uCCGCGauuUC-GUC-------------UUCGCGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 18209 0.66 0.780356
Target:  5'- cGGUGCcu-GGCcGggG-GCGCCGAUg -3'
miRNA:   3'- uCCGCGauuUCGuCuuCgCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 48189 0.66 0.776344
Target:  5'- -cGCGCagcgaauaccuGGCcaAGAAGCGCGCCuACa -3'
miRNA:   3'- ucCGCGauu--------UCG--UCUUCGCGCGGuUG- -5'
18254 3' -54.5 NC_004681.1 + 16149 0.66 0.774329
Target:  5'- -uGCGUUGcGGCGGAugcggugacagcggcGGCGCccuuGCCAGCa -3'
miRNA:   3'- ucCGCGAUuUCGUCU---------------UCGCG----CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 35635 0.66 0.770281
Target:  5'- cGGCGCaGAcGUGGGGuucgacaugguGCGCGCCGAg -3'
miRNA:   3'- uCCGCGaUUuCGUCUU-----------CGCGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 54046 0.66 0.770281
Target:  5'- -cGCGCgcccgAGAGCccuAGAAGCGCGgCAc- -3'
miRNA:   3'- ucCGCGa----UUUCG---UCUUCGCGCgGUug -5'
18254 3' -54.5 NC_004681.1 + 13682 0.66 0.768249
Target:  5'- uGGCGUggccgcccgcGGCcuuGAAGCGCGCguACg -3'
miRNA:   3'- uCCGCGauu-------UCGu--CUUCGCGCGguUG- -5'
18254 3' -54.5 NC_004681.1 + 7360 0.66 0.760063
Target:  5'- cGGCGCcGAGGUGGAcGGCcGCGUCGu- -3'
miRNA:   3'- uCCGCGaUUUCGUCU-UCG-CGCGGUug -5'
18254 3' -54.5 NC_004681.1 + 28042 0.66 0.760063
Target:  5'- cGGCGCUGGcgcuGGCGgucGAGGCgGUGgCGGCa -3'
miRNA:   3'- uCCGCGAUU----UCGU---CUUCG-CGCgGUUG- -5'
18254 3' -54.5 NC_004681.1 + 25180 0.66 0.760063
Target:  5'- gAGGUGCcgagGAGGCugagcGAGGUGCcGCCcGCg -3'
miRNA:   3'- -UCCGCGa---UUUCGu----CUUCGCG-CGGuUG- -5'
18254 3' -54.5 NC_004681.1 + 60931 0.66 0.760063
Target:  5'- cGGGCaGCggaaccacAGUGGAGGCGUGCCu-- -3'
miRNA:   3'- -UCCG-CGauu-----UCGUCUUCGCGCGGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.