miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18258 5' -58.6 NC_004681.1 + 18192 0.66 0.65545
Target:  5'- gGUCcuGGAGCGccuccCG-GCGCACCCccGGGUg -3'
miRNA:   3'- -CAGu-CCUUGCa----GCgCGCGUGGG--UCCG- -5'
18258 5' -58.6 NC_004681.1 + 8921 0.66 0.65545
Target:  5'- cUCGGGuGCGUCGCGCagACCUucaucGGUg -3'
miRNA:   3'- cAGUCCuUGCAGCGCGcgUGGGu----CCG- -5'
18258 5' -58.6 NC_004681.1 + 40245 0.66 0.65545
Target:  5'- aUCuGcGGCGUCGCGgccUGCcuguCCCGGGCg -3'
miRNA:   3'- cAGuCcUUGCAGCGC---GCGu---GGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 61562 0.66 0.644945
Target:  5'- gGUCAgaacGGAACGUCGUcauCGC-CCCAcuuguuGGCg -3'
miRNA:   3'- -CAGU----CCUUGCAGCGc--GCGuGGGU------CCG- -5'
18258 5' -58.6 NC_004681.1 + 57207 0.66 0.634428
Target:  5'- --aGGGGGCGgaUCGC-CGC-CCCAGGa -3'
miRNA:   3'- cagUCCUUGC--AGCGcGCGuGGGUCCg -5'
18258 5' -58.6 NC_004681.1 + 61281 0.66 0.622859
Target:  5'- --gAGGAAUGUgGCGuCGCcgucgacccaguuGCCCuGGGCg -3'
miRNA:   3'- cagUCCUUGCAgCGC-GCG-------------UGGG-UCCG- -5'
18258 5' -58.6 NC_004681.1 + 66191 0.66 0.613399
Target:  5'- -gCAGGccguccuCGUUGCGCGCAUaCAGcGCg -3'
miRNA:   3'- caGUCCuu-----GCAGCGCGCGUGgGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 66011 0.66 0.613399
Target:  5'- cGUgAGGGACcUUGCG-GuCGCCCAGGa -3'
miRNA:   3'- -CAgUCCUUGcAGCGCgC-GUGGGUCCg -5'
18258 5' -58.6 NC_004681.1 + 18383 0.66 0.602902
Target:  5'- aGUCgAGGAcuGCGgcCGUGcCGCGCCCGGaGUu -3'
miRNA:   3'- -CAG-UCCU--UGCa-GCGC-GCGUGGGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 64251 0.67 0.592429
Target:  5'- -cCAuGGAaaGCGUUGUGCGC-CaCAGGCa -3'
miRNA:   3'- caGU-CCU--UGCAGCGCGCGuGgGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 47485 0.67 0.592429
Target:  5'- -gCAGGAccGCGUCGCcgugGCGCGuuggCGGGCg -3'
miRNA:   3'- caGUCCU--UGCAGCG----CGCGUgg--GUCCG- -5'
18258 5' -58.6 NC_004681.1 + 7401 0.67 0.592429
Target:  5'- ---uGGAACGUCGCugGCGUGCagcucgucgCAGGCg -3'
miRNA:   3'- caguCCUUGCAGCG--CGCGUGg--------GUCCG- -5'
18258 5' -58.6 NC_004681.1 + 70094 0.67 0.592429
Target:  5'- aUCAGaGAC--CGCGCGCACaCGGGCc -3'
miRNA:   3'- cAGUCcUUGcaGCGCGCGUGgGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 43364 0.67 0.581986
Target:  5'- -cCGGGGACGUCauauccccgGCGCGCAcaguCCCugAGaGCa -3'
miRNA:   3'- caGUCCUUGCAG---------CGCGCGU----GGG--UC-CG- -5'
18258 5' -58.6 NC_004681.1 + 52992 0.67 0.581986
Target:  5'- -gCAGGAuuuggauuUGUCGC-CGCGgCUCGGGCa -3'
miRNA:   3'- caGUCCUu-------GCAGCGcGCGU-GGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 24685 0.67 0.581986
Target:  5'- gGUCgaaGGGAAUcuUCGagaugaugcCGCGCACCCAGuGCg -3'
miRNA:   3'- -CAG---UCCUUGc-AGC---------GCGCGUGGGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 13556 0.67 0.580943
Target:  5'- aUCAuGGGcgaagagACGUaCGCGCGCuucaagGCCgCGGGCg -3'
miRNA:   3'- cAGU-CCU-------UGCA-GCGCGCG------UGG-GUCCG- -5'
18258 5' -58.6 NC_004681.1 + 46874 0.67 0.57158
Target:  5'- -gCGGGAugaccgugACGcCGUGCGCGCgCAGcGCc -3'
miRNA:   3'- caGUCCU--------UGCaGCGCGCGUGgGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 38786 0.67 0.565359
Target:  5'- cUCAuGGAacuGCGggcCGCGCGCAaguccgccgagaccaUCCGGGCc -3'
miRNA:   3'- cAGU-CCU---UGCa--GCGCGCGU---------------GGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 61145 0.67 0.561221
Target:  5'- uGUCcaacGAACGcCGcCGCGaCGCCCAGGg -3'
miRNA:   3'- -CAGuc--CUUGCaGC-GCGC-GUGGGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.