miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18267 3' -59.9 NC_004681.1 + 3238 0.66 0.58774
Target:  5'- aGGCccUGGaGGAggGCGAGCCGCugGGCGc -3'
miRNA:   3'- aCCGcuACCgCCU--CGCUUGGUG--CCGC- -5'
18267 3' -59.9 NC_004681.1 + 65345 0.66 0.577413
Target:  5'- aGGCGAUGGCuuucacgaGGuGCGGcagGCCGCuGuCGg -3'
miRNA:   3'- aCCGCUACCG--------CCuCGCU---UGGUGcC-GC- -5'
18267 3' -59.9 NC_004681.1 + 47469 0.66 0.577413
Target:  5'- gUGGCGcguUGGCGG-GCGAcuaaguagucgACUucguUGGCGg -3'
miRNA:   3'- -ACCGCu--ACCGCCuCGCU-----------UGGu---GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 8624 0.66 0.577413
Target:  5'- cUGGcCGAUGGCcgcgGGGGCGGucucaccguCCGCgaaGGCGc -3'
miRNA:   3'- -ACC-GCUACCG----CCUCGCUu--------GGUG---CCGC- -5'
18267 3' -59.9 NC_004681.1 + 25192 0.66 0.577413
Target:  5'- aGGCcccUGGCGGcgcuGGC-AACgGCGGCGa -3'
miRNA:   3'- aCCGcu-ACCGCC----UCGcUUGgUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 62567 0.66 0.577413
Target:  5'- aGGaGAUGGaacgccgGGAGCGcGCCGaGGCGg -3'
miRNA:   3'- aCCgCUACCg------CCUCGCuUGGUgCCGC- -5'
18267 3' -59.9 NC_004681.1 + 18187 0.66 0.577413
Target:  5'- cUGGCGGUccUGGAGCGccuCC-CGGCGc -3'
miRNA:   3'- -ACCGCUAccGCCUCGCuu-GGuGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 18183 0.66 0.571236
Target:  5'- cGGgGAUGccgaugcccauacccGCGG-GCGGgacaaucggaagACCGCGGCGc -3'
miRNA:   3'- aCCgCUAC---------------CGCCuCGCU------------UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 13370 0.66 0.567127
Target:  5'- cGGacuCGAUGGCcuGGAcgcggaauucgGCGAGCUugacGCGGCGg -3'
miRNA:   3'- aCC---GCUACCG--CCU-----------CGCUUGG----UGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 6835 0.66 0.567127
Target:  5'- cUGGuCGAUGGUGGcuaGGGCCuuGGUGa -3'
miRNA:   3'- -ACC-GCUACCGCCucgCUUGGugCCGC- -5'
18267 3' -59.9 NC_004681.1 + 4237 0.66 0.567127
Target:  5'- -aGCGAUGG-GGuuguuGCGGGCCucaGCGGCc -3'
miRNA:   3'- acCGCUACCgCCu----CGCUUGG---UGCCGc -5'
18267 3' -59.9 NC_004681.1 + 46754 0.66 0.567127
Target:  5'- gUGGUGGgaccGGCGcuGCGcGCgCACGGCGu -3'
miRNA:   3'- -ACCGCUa---CCGCcuCGCuUG-GUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 68612 0.66 0.556888
Target:  5'- aUGGCGcccaGGCGugccGCGAGCCAuucagUGGCGg -3'
miRNA:   3'- -ACCGCua--CCGCcu--CGCUUGGU-----GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 14645 0.66 0.556888
Target:  5'- gUGGCGGUGGCGGcgauGCcGACCcCGuuGa -3'
miRNA:   3'- -ACCGCUACCGCCu---CGcUUGGuGCcgC- -5'
18267 3' -59.9 NC_004681.1 + 27602 0.66 0.55077
Target:  5'- aGGCGccugggucacccucgGUGGCGcuGGCG-GCgGCGGCGg -3'
miRNA:   3'- aCCGC---------------UACCGCc-UCGCuUGgUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 11371 0.66 0.546703
Target:  5'- cUGGCGAccUGGCuGA-CGAAguCCACGaGCGg -3'
miRNA:   3'- -ACCGCU--ACCGcCUcGCUU--GGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 18737 0.66 0.546703
Target:  5'- gGGCGAcGGCG--GCGAgGCCGCGcGUGa -3'
miRNA:   3'- aCCGCUaCCGCcuCGCU-UGGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 3402 0.66 0.546703
Target:  5'- uUGGCcgcGGCGcccgcGCGAGCCACGcGCGc -3'
miRNA:   3'- -ACCGcuaCCGCcu---CGCUUGGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 62175 0.66 0.545687
Target:  5'- cGGCGGgcacgGGCGGcaagaucGGCGAGauugaggaCAUGGUGg -3'
miRNA:   3'- aCCGCUa----CCGCC-------UCGCUUg-------GUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 16160 0.66 0.542645
Target:  5'- gGGCGGcagucugcguugcGGCGGAuGCGGugacaGCgGCGGCGc -3'
miRNA:   3'- aCCGCUa------------CCGCCU-CGCU-----UGgUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.