Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18275 | 3' | -54.9 | NC_004681.1 | + | 46699 | 0.66 | 0.827884 |
Target: 5'- gUCcUCGGCGAGUggGCcgGUCugGGCu -3' miRNA: 3'- gAGcAGCCGUUCGa-CGuaUGGugCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 7465 | 0.66 | 0.827884 |
Target: 5'- uCUCGgccGCGGGCUugGCGggaggcuucGCCGCGGCg -3' miRNA: 3'- -GAGCagcCGUUCGA--CGUa--------UGGUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 10231 | 0.66 | 0.824308 |
Target: 5'- gCUCccCGGUucGCUGCGggugaccuacacCCACGGCu -3' miRNA: 3'- -GAGcaGCCGuuCGACGUau----------GGUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 68482 | 0.66 | 0.818885 |
Target: 5'- cCUUGUCGucCAAGCUGUGUuCCAC-GCa -3' miRNA: 3'- -GAGCAGCc-GUUCGACGUAuGGUGcCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 30149 | 0.66 | 0.809697 |
Target: 5'- --gGUCGGgcuCAGGCgGCGcgGCCGCGGa -3' miRNA: 3'- gagCAGCC---GUUCGaCGUa-UGGUGCCg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 30423 | 0.66 | 0.809697 |
Target: 5'- -gCGUCGGCAAcccguaUGUGUACgGCGGg -3' miRNA: 3'- gaGCAGCCGUUcg----ACGUAUGgUGCCg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 24621 | 0.66 | 0.800329 |
Target: 5'- uCUCGUCuccuuGGCUGCAUcccgcgacaacACCGCGGa -3' miRNA: 3'- -GAGCAGccgu-UCGACGUA-----------UGGUGCCg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 27752 | 0.66 | 0.800329 |
Target: 5'- uUCGgugacgcgCGGCAgcGGCgGCA-GCgGCGGCg -3' miRNA: 3'- gAGCa-------GCCGU--UCGaCGUaUGgUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 13649 | 0.66 | 0.797485 |
Target: 5'- -aCGUCucuucgcccaugauGGCGauGGCggaGCGaACCACGGCg -3' miRNA: 3'- gaGCAG--------------CCGU--UCGa--CGUaUGGUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 47922 | 0.66 | 0.797485 |
Target: 5'- uUCGgggcacgCGGUgacGAGCauccaccaggugggUGCGUACUugGGCg -3' miRNA: 3'- gAGCa------GCCG---UUCG--------------ACGUAUGGugCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 28119 | 0.66 | 0.790792 |
Target: 5'- -cCGUCGGUcuuGCUGCc-ACCGCuGGUa -3' miRNA: 3'- gaGCAGCCGuu-CGACGuaUGGUG-CCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 39279 | 0.66 | 0.790792 |
Target: 5'- gUCGagGGCGAGCaucu--CCGCGGCc -3' miRNA: 3'- gAGCagCCGUUCGacguauGGUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 46906 | 0.66 | 0.789829 |
Target: 5'- gCUCG-CGGCGAcugguucGCUgGCAcUACCuACGGUg -3' miRNA: 3'- -GAGCaGCCGUU-------CGA-CGU-AUGG-UGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 59804 | 0.66 | 0.787899 |
Target: 5'- -gUGUUGGCAGGCcGCAcuCCcagcagggggcgugGCGGCg -3' miRNA: 3'- gaGCAGCCGUUCGaCGUauGG--------------UGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 52546 | 0.67 | 0.781094 |
Target: 5'- cCUCGUgGGCGAGCaaGCGUuccucaaucGCCuCGcGCa -3' miRNA: 3'- -GAGCAgCCGUUCGa-CGUA---------UGGuGC-CG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 12408 | 0.67 | 0.781094 |
Target: 5'- gCUCGUCGGUGAGCcgGUGacggACgaggACGGCg -3' miRNA: 3'- -GAGCAGCCGUUCGa-CGUa---UGg---UGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 62621 | 0.67 | 0.781094 |
Target: 5'- -gUGUCGGaggcGGCUGCcaggGUGCCcAUGGCc -3' miRNA: 3'- gaGCAGCCgu--UCGACG----UAUGG-UGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 30769 | 0.67 | 0.771248 |
Target: 5'- -aUGgaaGGCGAGCUug--ACCGCGGCg -3' miRNA: 3'- gaGCag-CCGUUCGAcguaUGGUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 12050 | 0.67 | 0.771248 |
Target: 5'- uCUCcagCGGCAGGUUGU--ACCGCaGGUa -3' miRNA: 3'- -GAGca-GCCGUUCGACGuaUGGUG-CCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 39355 | 0.67 | 0.771248 |
Target: 5'- aCUUGacgCGGC-GGCccuugGCGcccuUGCCGCGGCg -3' miRNA: 3'- -GAGCa--GCCGuUCGa----CGU----AUGGUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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