miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 12996 0.66 0.644199
Target:  5'- -aCACCGC-UGGCAcCGCGGacgACgUGGCc -3'
miRNA:   3'- caGUGGCGcGUCGU-GCGCCa--UG-ACCG- -5'
18280 3' -58.6 NC_004681.1 + 31881 0.66 0.644198
Target:  5'- gGUCAgCaGUGcCAGCGCGCGGUcuucuuGCcGGUc -3'
miRNA:   3'- -CAGUgG-CGC-GUCGUGCGCCA------UGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 28268 0.66 0.644198
Target:  5'- cGUCACCuGCGuCAGUGC-CGGUGCc-GCu -3'
miRNA:   3'- -CAGUGG-CGC-GUCGUGcGCCAUGacCG- -5'
18280 3' -58.6 NC_004681.1 + 32104 0.66 0.644198
Target:  5'- -aCACC-CGCGGCGCcgaucaGCGaGccgaUGCUGGCg -3'
miRNA:   3'- caGUGGcGCGUCGUG------CGC-C----AUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 56854 0.66 0.644198
Target:  5'- cUCGCCcCGCGGCACGUcguaGGUGuagcccuuCUGGa -3'
miRNA:   3'- cAGUGGcGCGUCGUGCG----CCAU--------GACCg -5'
18280 3' -58.6 NC_004681.1 + 66539 0.66 0.633638
Target:  5'- -aCGCCGCgGgAGU-CGCGGUAC-GGUg -3'
miRNA:   3'- caGUGGCG-CgUCGuGCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 16586 0.66 0.633638
Target:  5'- aGUUGCCgggGCGCGGCGCcgaguaguccGUGGgggGCUGGa -3'
miRNA:   3'- -CAGUGG---CGCGUCGUG----------CGCCa--UGACCg -5'
18280 3' -58.6 NC_004681.1 + 10330 0.66 0.633638
Target:  5'- gGUCACC-CGCAGCGaacCGgGGaGCcagGGCc -3'
miRNA:   3'- -CAGUGGcGCGUCGU---GCgCCaUGa--CCG- -5'
18280 3' -58.6 NC_004681.1 + 31225 0.66 0.623076
Target:  5'- aUCGCaGCGUGGCugGgGG-ACcGGCg -3'
miRNA:   3'- cAGUGgCGCGUCGugCgCCaUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 13094 0.66 0.623076
Target:  5'- cGUCGuCCGCGguGC-CaGCGGUguaGCcGGUg -3'
miRNA:   3'- -CAGU-GGCGCguCGuG-CGCCA---UGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 17428 0.66 0.62202
Target:  5'- gGUCGCCGCGCugauccugcguguAGCGuccCGCGGgcacGCgcgccagcagGGCg -3'
miRNA:   3'- -CAGUGGCGCG-------------UCGU---GCGCCa---UGa---------CCG- -5'
18280 3' -58.6 NC_004681.1 + 27905 0.66 0.612521
Target:  5'- cUCGuCCaGUaGCGGCACGCGGggcCUcGGCg -3'
miRNA:   3'- cAGU-GG-CG-CGUCGUGCGCCau-GA-CCG- -5'
18280 3' -58.6 NC_004681.1 + 57403 0.66 0.612521
Target:  5'- cUCAgCGCGCuc--CGCGaUGCUGGCg -3'
miRNA:   3'- cAGUgGCGCGucguGCGCcAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 60206 0.66 0.601983
Target:  5'- -cCGCCGCGCGGggauCACGCc-UAgUGGCg -3'
miRNA:   3'- caGUGGCGCGUC----GUGCGccAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 74614 0.66 0.601982
Target:  5'- -gCACUGUGC-GCACGCu---CUGGCg -3'
miRNA:   3'- caGUGGCGCGuCGUGCGccauGACCG- -5'
18280 3' -58.6 NC_004681.1 + 42975 0.66 0.601982
Target:  5'- cUCGgugUCGCGCAgGCACGCGcUGCaGGUg -3'
miRNA:   3'- cAGU---GGCGCGU-CGUGCGCcAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 12308 0.66 0.601982
Target:  5'- -cCACCGgggaUGCGGCGCGCGGggaagcccgACgccgGGUc -3'
miRNA:   3'- caGUGGC----GCGUCGUGCGCCa--------UGa---CCG- -5'
18280 3' -58.6 NC_004681.1 + 47234 0.66 0.601982
Target:  5'- --aACuCGCGCAGUucgGCGCGGccCUcGGCg -3'
miRNA:   3'- cagUG-GCGCGUCG---UGCGCCauGA-CCG- -5'
18280 3' -58.6 NC_004681.1 + 6678 0.66 0.600929
Target:  5'- -cCAUgGCGCccuugacGGCGCGCaGGUGCUucGGUg -3'
miRNA:   3'- caGUGgCGCG-------UCGUGCG-CCAUGA--CCG- -5'
18280 3' -58.6 NC_004681.1 + 30877 0.66 0.591467
Target:  5'- aGUCAUgGCGCGGC-CGuUGGUGaccaGGCc -3'
miRNA:   3'- -CAGUGgCGCGUCGuGC-GCCAUga--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.