miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 3' -65.2 NC_004681.1 + 34712 0.66 0.335247
Target:  5'- gGUG-CGGGCuuGGGaauuCCCGCgcgcuucgGCCGCCg -3'
miRNA:   3'- -UACuGCCCGu-CCCgc--GGGUG--------CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 56819 0.66 0.335247
Target:  5'- -gGAUGGGCugaccaucGGGUGUCCAgccgaugagcuCGCCGUa -3'
miRNA:   3'- uaCUGCCCGu-------CCCGCGGGU-----------GCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 66936 0.66 0.335247
Target:  5'- uGUGGCGGcCcuGGUGCCgCGCGCCGa- -3'
miRNA:   3'- -UACUGCCcGucCCGCGG-GUGCGGCgg -5'
18283 3' -65.2 NC_004681.1 + 2918 0.66 0.335247
Target:  5'- -gGGCcuGGCuGGGCGacggcaccgCCACGCgCGCCg -3'
miRNA:   3'- uaCUGc-CCGuCCCGCg--------GGUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 10752 0.66 0.327817
Target:  5'- --cGCGGGCaccgGGGGCGCCagGCaGCgGUCa -3'
miRNA:   3'- uacUGCCCG----UCCCGCGGg-UG-CGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 57597 0.66 0.327817
Target:  5'- cGUGA-GGGCGcGGaCGCUcuCACGCuCGCCg -3'
miRNA:   3'- -UACUgCCCGUcCC-GCGG--GUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 30266 0.66 0.320511
Target:  5'- ---uUGGcGUAGGuccacuccGCGgCCGCGCCGCCu -3'
miRNA:   3'- uacuGCC-CGUCC--------CGCgGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 21424 0.66 0.320511
Target:  5'- ---cUGGGCAaGGUGCUgGCGCCGUUc -3'
miRNA:   3'- uacuGCCCGUcCCGCGGgUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 17952 0.66 0.319064
Target:  5'- -cGA-GGGCGgcuccguGGGCcaccgcaGCCCAUGCgGCCa -3'
miRNA:   3'- uaCUgCCCGU-------CCCG-------CGGGUGCGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 29505 0.66 0.318343
Target:  5'- aGUGACGccagaccacgcgguGGUGGaGGCGCUgAUGuuGCCa -3'
miRNA:   3'- -UACUGC--------------CCGUC-CCGCGGgUGCggCGG- -5'
18283 3' -65.2 NC_004681.1 + 67209 0.66 0.313327
Target:  5'- -cGugGuGGUcucauucGGGCcguaGCCCACGuuGCCg -3'
miRNA:   3'- uaCugC-CCGu------CCCG----CGGGUGCggCGG- -5'
18283 3' -65.2 NC_004681.1 + 59649 0.66 0.313327
Target:  5'- --aGCGGGCGuccgaagcgguGGGCuuccaGCCaacauggcaGCGCCGCCa -3'
miRNA:   3'- uacUGCCCGU-----------CCCG-----CGGg--------UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 7317 0.66 0.306265
Target:  5'- -cGACGuuccacccccGGCacccGGGGCuGaCCC-CGCCGCCg -3'
miRNA:   3'- uaCUGC----------CCG----UCCCG-C-GGGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 14649 0.66 0.306265
Target:  5'- -cGugGuGGCGGuGGCGgCgAUGCCGaCCc -3'
miRNA:   3'- uaCugC-CCGUC-CCGCgGgUGCGGC-GG- -5'
18283 3' -65.2 NC_004681.1 + 18208 0.66 0.306265
Target:  5'- gGUGcCuGGCcgGGGGCGCCgAUGCCggggauGCCg -3'
miRNA:   3'- -UACuGcCCG--UCCCGCGGgUGCGG------CGG- -5'
18283 3' -65.2 NC_004681.1 + 65216 0.66 0.306265
Target:  5'- uGUGGCGGccguacuuCAGGGCGCCUuccaucauUGCCagGCCg -3'
miRNA:   3'- -UACUGCCc-------GUCCCGCGGGu-------GCGG--CGG- -5'
18283 3' -65.2 NC_004681.1 + 68619 0.66 0.306265
Target:  5'- --cACcGGCAuGGCGCCCAgGCgUGCCg -3'
miRNA:   3'- uacUGcCCGUcCCGCGGGUgCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 16026 0.66 0.306265
Target:  5'- -cGGCugcuGGCaAGGGCGCCgC-CGCUGUCa -3'
miRNA:   3'- uaCUGc---CCG-UCCCGCGG-GuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 12296 0.66 0.299326
Target:  5'- -cGGCGcGCGGGGaaGCCCgACGCCGgguCCg -3'
miRNA:   3'- uaCUGCcCGUCCCg-CGGG-UGCGGC---GG- -5'
18283 3' -65.2 NC_004681.1 + 53359 0.67 0.292509
Target:  5'- ---cCGGG-AGGGCuauacCCUugGCCGCCu -3'
miRNA:   3'- uacuGCCCgUCCCGc----GGGugCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.