miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18285 3' -56.4 NC_004681.1 + 18708 0.65 0.786858
Target:  5'- uGCCAGCGGuGUUCUcccccgcggGCUUGAuguugccgauacccAUGGCg -3'
miRNA:   3'- gCGGUUGCC-CAAGG---------UGGACU--------------UGCCGg -5'
18285 3' -56.4 NC_004681.1 + 12382 0.66 0.78114
Target:  5'- uGCCGA-GGGUUgCCACaggggcgaccucggGAGuCGGCCa -3'
miRNA:   3'- gCGGUUgCCCAA-GGUGga------------CUU-GCCGG- -5'
18285 3' -56.4 NC_004681.1 + 24968 0.66 0.780182
Target:  5'- uCGCCAuuGCuGGUgagggaGCCUuGGCGGCCg -3'
miRNA:   3'- -GCGGU--UGcCCAagg---UGGAcUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 48664 0.66 0.780182
Target:  5'- aCGCUGGCGGGaa-C-CCUGGcgGGCCa -3'
miRNA:   3'- -GCGGUUGCCCaagGuGGACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 32776 0.66 0.780182
Target:  5'- aCGUCGGCGGGguacccggaCCACaUGu-CGGCCc -3'
miRNA:   3'- -GCGGUUGCCCaa-------GGUGgACuuGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 5630 0.66 0.780182
Target:  5'- aGCUucuCGGGgguaCCGCucuuguucuuCUGGAUGGCCa -3'
miRNA:   3'- gCGGuu-GCCCaa--GGUG----------GACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 27733 0.66 0.779222
Target:  5'- aGCUcAUGGGcUCCACCuauucggUGAcgcGCGGCa -3'
miRNA:   3'- gCGGuUGCCCaAGGUGG-------ACU---UGCCGg -5'
18285 3' -56.4 NC_004681.1 + 8331 0.66 0.770524
Target:  5'- gCGCCu-CGaccUCgGCCUGGugGGCCu -3'
miRNA:   3'- -GCGGuuGCccaAGgUGGACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 38899 0.66 0.769551
Target:  5'- gGCCAGCcugcuggcguGGGUcaaUCCauggccaGCCUGcAAcCGGCCa -3'
miRNA:   3'- gCGGUUG----------CCCA---AGG-------UGGAC-UU-GCCGG- -5'
18285 3' -56.4 NC_004681.1 + 3096 0.66 0.769551
Target:  5'- aGUCGuaggagaGCGGGUaccggCUGCCUcGAUGGCCg -3'
miRNA:   3'- gCGGU-------UGCCCAa----GGUGGAcUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 41665 0.66 0.750821
Target:  5'- uGCCuGCGGGguggCGCUgcauGGCGGCCg -3'
miRNA:   3'- gCGGuUGCCCaag-GUGGac--UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 25339 0.66 0.750821
Target:  5'- cCGCCGccGCGGGcgccauggCCGCCguuguUGAagaaGCGGUCg -3'
miRNA:   3'- -GCGGU--UGCCCaa------GGUGG-----ACU----UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 17699 0.66 0.750821
Target:  5'- aCGCCucGACGG--UUCGCCaGucGACGGCCg -3'
miRNA:   3'- -GCGG--UUGCCcaAGGUGGaC--UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 61974 0.66 0.750821
Target:  5'- gCGUCAucGCGGGcaugcaccugUUCgACCaGAucGCGGCCu -3'
miRNA:   3'- -GCGGU--UGCCC----------AAGgUGGaCU--UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 19257 0.66 0.750821
Target:  5'- gCGCCA---GGUcUUCACCUGGaccGCGGUCa -3'
miRNA:   3'- -GCGGUugcCCA-AGGUGGACU---UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 8915 0.66 0.750821
Target:  5'- uGgCGGCGGGUaCC-CCggcgucAACGGCCu -3'
miRNA:   3'- gCgGUUGCCCAaGGuGGac----UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 21526 0.66 0.746825
Target:  5'- gCGCUAuucguugaccacccGCGcGGUggccucaccgaauUCCACCUaAAUGGCCa -3'
miRNA:   3'- -GCGGU--------------UGC-CCA-------------AGGUGGAcUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 42262 0.66 0.740797
Target:  5'- cCGCCcGCGGaaggCGCCUucACGGCCu -3'
miRNA:   3'- -GCGGuUGCCcaagGUGGAcuUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 12932 0.66 0.740797
Target:  5'- uGUCAACGGaaaggcCCUGAGCGGCa -3'
miRNA:   3'- gCGGUUGCCcaagguGGACUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 30280 0.66 0.740797
Target:  5'- uGCCGucaGGGUucuuggcguaggUCCACUcc-GCGGCCg -3'
miRNA:   3'- gCGGUug-CCCA------------AGGUGGacuUGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.