miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 73231 0.69 0.519884
Target:  5'- aCGCUGAgGCUGAggcugucgaggcgGAGGcagaGACCGCu -3'
miRNA:   3'- gGCGGCUgCGGCUa------------CUCCag--CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 69103 0.66 0.686535
Target:  5'- cUCGUCGugagguucGCGCgGAUcGAGGUCGuugUCGCa -3'
miRNA:   3'- -GGCGGC--------UGCGgCUA-CUCCAGCu--GGCG- -5'
18286 3' -58.8 NC_004681.1 + 69004 0.72 0.35365
Target:  5'- gCgGCCGugacgauggucaGCGCCucGAUGGcGUCGGCCGCg -3'
miRNA:   3'- -GgCGGC------------UGCGG--CUACUcCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 68889 0.69 0.50521
Target:  5'- gCgGCCGACGCCaucGAGGcgcugaccaucgucaCGGCCGCc -3'
miRNA:   3'- -GgCGGCUGCGGcuaCUCCa--------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 68758 0.67 0.604562
Target:  5'- aCGCC-AgGCCGAaggaguuagaUGAcGGUCGACCa- -3'
miRNA:   3'- gGCGGcUgCGGCU----------ACU-CCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 68280 0.67 0.635363
Target:  5'- -gGCCuuGACGUCGAUGGGGaaGAguUCGCu -3'
miRNA:   3'- ggCGG--CUGCGGCUACUCCagCU--GGCG- -5'
18286 3' -58.8 NC_004681.1 + 67912 0.66 0.696668
Target:  5'- aCGCaCGACGCUGucauaGGGGcCGAacaCGCc -3'
miRNA:   3'- gGCG-GCUGCGGCua---CUCCaGCUg--GCG- -5'
18286 3' -58.8 NC_004681.1 + 67178 0.66 0.670231
Target:  5'- uCCGUCGcauCGCCaccgagaaggaaggcGAUGAGGcugUCGgcaACCGCa -3'
miRNA:   3'- -GGCGGCu--GCGG---------------CUACUCC---AGC---UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 65888 0.66 0.655898
Target:  5'- gCgGCCGAgGCCGA-GAcGGaCGAacuCCGCc -3'
miRNA:   3'- -GgCGGCUgCGGCUaCU-CCaGCU---GGCG- -5'
18286 3' -58.8 NC_004681.1 + 65075 0.74 0.249514
Target:  5'- cCCGCUcggGugGUCGccGAGGUCGGCCugGCa -3'
miRNA:   3'- -GGCGG---CugCGGCuaCUCCAGCUGG--CG- -5'
18286 3' -58.8 NC_004681.1 + 63053 0.7 0.424101
Target:  5'- gCCGCCGcCGCCaccaccgccgaaggaGAUGGaGUCGACCa- -3'
miRNA:   3'- -GGCGGCuGCGG---------------CUACUcCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 62694 0.71 0.403122
Target:  5'- gUCGUCGGCGCCgGAUGAGG-CGGaCGg -3'
miRNA:   3'- -GGCGGCUGCGG-CUACUCCaGCUgGCg -5'
18286 3' -58.8 NC_004681.1 + 61667 0.75 0.220903
Target:  5'- -aGCCGcCGCCGcgGAGGcCG-CCGCc -3'
miRNA:   3'- ggCGGCuGCGGCuaCUCCaGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 61443 0.66 0.686535
Target:  5'- -aGCCGACGCCaacaaGUGGGG-CGAugacgacguuCCGUu -3'
miRNA:   3'- ggCGGCUGCGGc----UACUCCaGCU----------GGCG- -5'
18286 3' -58.8 NC_004681.1 + 61157 0.71 0.377842
Target:  5'- gCCGCCgcGACGCCcaGGgcaacuGGGUCGACgGCg -3'
miRNA:   3'- -GGCGG--CUGCGG--CUac----UCCAGCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 61084 0.68 0.557756
Target:  5'- aCCGCCGACcCCGAgcUGcGGUUcacccaaggugggcaGGCCGUc -3'
miRNA:   3'- -GGCGGCUGcGGCU--ACuCCAG---------------CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 59098 0.67 0.625088
Target:  5'- cCCcCCaGACGCUGA--AGGUCuACCGCc -3'
miRNA:   3'- -GGcGG-CUGCGGCUacUCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 58535 0.77 0.159376
Target:  5'- aCGUgGGCGCCGGucuUGGcGUCGGCCGCg -3'
miRNA:   3'- gGCGgCUGCGGCU---ACUcCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 57804 0.68 0.573944
Target:  5'- gCGCCG-CGCCGccGAGGUggCGAaggaGCg -3'
miRNA:   3'- gGCGGCuGCGGCuaCUCCA--GCUgg--CG- -5'
18286 3' -58.8 NC_004681.1 + 56814 0.67 0.644609
Target:  5'- -gGCUGACcaucggguguccaGCCGAUGAGcUCG-CCGUa -3'
miRNA:   3'- ggCGGCUG-------------CGGCUACUCcAGCuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.