miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18314 3' -55.2 NC_004681.1 + 17925 0.66 0.830675
Target:  5'- -gGUGagGCCGg-UGCCUUGcGCGGCc -3'
miRNA:   3'- agUACagCGGCaaACGGAGC-CGCUGc -5'
18314 3' -55.2 NC_004681.1 + 42828 0.66 0.830675
Target:  5'- -gAUGUCGUCGUcgGUUUUGGUGAa- -3'
miRNA:   3'- agUACAGCGGCAaaCGGAGCCGCUgc -5'
18314 3' -55.2 NC_004681.1 + 55843 0.66 0.830675
Target:  5'- -gGUGcUCGUgGUauUUGCCUUGGCuACGa -3'
miRNA:   3'- agUAC-AGCGgCA--AACGGAGCCGcUGC- -5'
18314 3' -55.2 NC_004681.1 + 19110 0.66 0.821827
Target:  5'- -gGUGUCGCCGU----CUUGGCGAg- -3'
miRNA:   3'- agUACAGCGGCAaacgGAGCCGCUgc -5'
18314 3' -55.2 NC_004681.1 + 60355 0.66 0.820931
Target:  5'- gUCGUgGUUGCgCGUaaGCCUCucgugggcacgguGGCGGCGa -3'
miRNA:   3'- -AGUA-CAGCG-GCAaaCGGAG-------------CCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 29535 0.66 0.81279
Target:  5'- -gGUGUaGCCG-UUGCCcgaGGCGACc -3'
miRNA:   3'- agUACAgCGGCaAACGGag-CCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 67990 0.66 0.81279
Target:  5'- ---aGUCGCCGg-UGUCaagGGCGACGa -3'
miRNA:   3'- aguaCAGCGGCaaACGGag-CCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 30139 0.66 0.803575
Target:  5'- ---cGagGCCGaugGCCgCGGCGGCGa -3'
miRNA:   3'- aguaCagCGGCaaaCGGaGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 47469 0.66 0.794189
Target:  5'- aUCAgGUCGCCGcgUGCgaCGGCcACu -3'
miRNA:   3'- -AGUaCAGCGGCaaACGgaGCCGcUGc -5'
18314 3' -55.2 NC_004681.1 + 49932 0.67 0.774948
Target:  5'- aCGUGaaaGCCc-UUGuCCUCGGCGGCa -3'
miRNA:   3'- aGUACag-CGGcaAAC-GGAGCCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 1359 0.67 0.774948
Target:  5'- aCAUGuUCGCCGUguucUGCgaggCGGUGGCc -3'
miRNA:   3'- aGUAC-AGCGGCAa---ACGga--GCCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 32460 0.67 0.765113
Target:  5'- ----cUCGCCGcggGCCggaUCGGUGACGa -3'
miRNA:   3'- aguacAGCGGCaaaCGG---AGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 32922 0.67 0.755148
Target:  5'- uUCggGUCGCUGcgcaucGCCugaaggacuucaUCGGCGGCGg -3'
miRNA:   3'- -AGuaCAGCGGCaaa---CGG------------AGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 57756 0.67 0.745065
Target:  5'- -gGUGuUCGCCGa--GCUUCaGGCGACa -3'
miRNA:   3'- agUAC-AGCGGCaaaCGGAG-CCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 19365 0.67 0.745065
Target:  5'- cCggGUCGaCCacaccgGCCUgGGCGACGg -3'
miRNA:   3'- aGuaCAGC-GGcaaa--CGGAgCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 58535 0.67 0.734874
Target:  5'- aCGUGggCGCCGgucuugGCgUCGGCcGCGg -3'
miRNA:   3'- aGUACa-GCGGCaaa---CGgAGCCGcUGC- -5'
18314 3' -55.2 NC_004681.1 + 15499 0.68 0.728712
Target:  5'- uUCAUGUCcuuggcggacaggguGCCGUUcuggaugGCgUCGGCGaACGc -3'
miRNA:   3'- -AGUACAG---------------CGGCAAa------CGgAGCCGC-UGC- -5'
18314 3' -55.2 NC_004681.1 + 40570 0.68 0.724585
Target:  5'- ---cGUCGCCGag-GCaaaCGGCGACa -3'
miRNA:   3'- aguaCAGCGGCaaaCGga-GCCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 41680 0.68 0.724585
Target:  5'- uUCA--UCGCCGUgcgcUGCCUgCGGgGugGc -3'
miRNA:   3'- -AGUacAGCGGCAa---ACGGA-GCCgCugC- -5'
18314 3' -55.2 NC_004681.1 + 14307 0.68 0.724585
Target:  5'- gCGUagCGCCGUUucUGCUUCGGUGcCGa -3'
miRNA:   3'- aGUAcaGCGGCAA--ACGGAGCCGCuGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.