miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18315 3' -54.4 NC_004681.1 + 32101 0.65 0.851316
Target:  5'- aGGUCGUCAccggcauccaggaagCGGUCAcCGCggCGGCCCa -3'
miRNA:   3'- -UCAGCGGUaa-------------GUCGGU-GCGa-GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 72822 0.65 0.850478
Target:  5'- aAGUCGCguagaugcgagucCAUccccugcccuaagcUCAGCCACGCgcgcggCAACUUg -3'
miRNA:   3'- -UCAGCG-------------GUA--------------AGUCGGUGCGa-----GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 14647 0.66 0.845406
Target:  5'- uGGUgGCgGUggCGGCgAUGC-CGACCCc -3'
miRNA:   3'- -UCAgCGgUAa-GUCGgUGCGaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 29820 0.66 0.845406
Target:  5'- aAG-CGCgCGUguaUCAGCUGCGCgCGGCCg -3'
miRNA:   3'- -UCaGCG-GUA---AGUCGGUGCGaGUUGGg -5'
18315 3' -54.4 NC_004681.1 + 15687 0.66 0.845406
Target:  5'- cGUCGCCGaaCAGUgacgagaaCACGgUCAugCCc -3'
miRNA:   3'- uCAGCGGUaaGUCG--------GUGCgAGUugGG- -5'
18315 3' -54.4 NC_004681.1 + 13414 0.66 0.844553
Target:  5'- -uUCGCCGUugUCGGCCucgaucuccAgGCUCGacagggcGCCCu -3'
miRNA:   3'- ucAGCGGUA--AGUCGG---------UgCGAGU-------UGGG- -5'
18315 3' -54.4 NC_004681.1 + 2872 0.66 0.83678
Target:  5'- -cUCGaCCGUgacgaAGCCccccuccCGCUCGACCCc -3'
miRNA:   3'- ucAGC-GGUAag---UCGGu------GCGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 36191 0.66 0.83678
Target:  5'- --gCGCCcg-CAGCC--GCUCAACCUc -3'
miRNA:   3'- ucaGCGGuaaGUCGGugCGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 37669 0.66 0.83678
Target:  5'- -cUCGCCAg-CGGCCGCGCgUCGcuucUCCa -3'
miRNA:   3'- ucAGCGGUaaGUCGGUGCG-AGUu---GGG- -5'
18315 3' -54.4 NC_004681.1 + 50016 0.66 0.83678
Target:  5'- --gCGCCGUcUGGCCGCGCUaCAaggagcGCCUc -3'
miRNA:   3'- ucaGCGGUAaGUCGGUGCGA-GU------UGGG- -5'
18315 3' -54.4 NC_004681.1 + 7312 0.66 0.836779
Target:  5'- uGUCGCCGUUaccggcacCGGCCGCcuuCUCGaguACCUu -3'
miRNA:   3'- uCAGCGGUAA--------GUCGGUGc--GAGU---UGGG- -5'
18315 3' -54.4 NC_004681.1 + 57508 0.66 0.836779
Target:  5'- gGGUgaCGCCAgcaUCGcggagcgcGCUgagauguuccuGCGCUCGACCCa -3'
miRNA:   3'- -UCA--GCGGUa--AGU--------CGG-----------UGCGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 73479 0.66 0.836779
Target:  5'- cGGUUGgUAcUCGcGCCauGCGCUCAugCCu -3'
miRNA:   3'- -UCAGCgGUaAGU-CGG--UGCGAGUugGG- -5'
18315 3' -54.4 NC_004681.1 + 16386 0.66 0.835906
Target:  5'- gGGUUGCC--UCGGCCAC-CUCcaaggguGACCa -3'
miRNA:   3'- -UCAGCGGuaAGUCGGUGcGAG-------UUGGg -5'
18315 3' -54.4 NC_004681.1 + 2621 0.66 0.827944
Target:  5'- aAGUCGgggauuaCGUUCAcGCCGCGgaCGgcACCCu -3'
miRNA:   3'- -UCAGCg------GUAAGU-CGGUGCgaGU--UGGG- -5'
18315 3' -54.4 NC_004681.1 + 62476 0.66 0.827944
Target:  5'- uGUCGCCGggaaUgGGCU-CGCUCAugCg -3'
miRNA:   3'- uCAGCGGUa---AgUCGGuGCGAGUugGg -5'
18315 3' -54.4 NC_004681.1 + 55417 0.66 0.827944
Target:  5'- cGGuUCGCCAU--GGCgACGaaCUCAGCCUu -3'
miRNA:   3'- -UC-AGCGGUAagUCGgUGC--GAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 60282 0.66 0.827944
Target:  5'- gGGU-GCCGaUCAcCuCGCGCUCAGCaCCa -3'
miRNA:   3'- -UCAgCGGUaAGUcG-GUGCGAGUUG-GG- -5'
18315 3' -54.4 NC_004681.1 + 10021 0.66 0.825253
Target:  5'- cGUCGCCAUcgUggacccguacugcgGGUCAuCGCUCcuGCCCa -3'
miRNA:   3'- uCAGCGGUAa-G--------------UCGGU-GCGAGu-UGGG- -5'
18315 3' -54.4 NC_004681.1 + 47472 0.66 0.818907
Target:  5'- aGGUCGCCGcgugcgaCGGCCACuacaagucgcuGCUCuacACCUa -3'
miRNA:   3'- -UCAGCGGUaa-----GUCGGUG-----------CGAGu--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.