miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18334 5' -63.1 NC_004681.1 + 8716 0.66 0.444723
Target:  5'- --aCGCCGCCGCgGUCGCUGAAGccGGGa -3'
miRNA:   3'- gcgGCGGCGGUGgUGGCGGCUUC--CUC- -5'
18334 5' -63.1 NC_004681.1 + 25195 0.66 0.444723
Target:  5'- gGuCCGCgGCCaACCGaggUGCCG-AGGAGg -3'
miRNA:   3'- gC-GGCGgCGG-UGGUg--GCGGCuUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 45547 0.66 0.444723
Target:  5'- aCGCUGUCGuUCAUCACCacaCCGAGGGcGg -3'
miRNA:   3'- -GCGGCGGC-GGUGGUGGc--GGCUUCCuC- -5'
18334 5' -63.1 NC_004681.1 + 17806 0.66 0.444723
Target:  5'- cCGCgGCCGUCgACUggcgaACCGUCGAggcguagucGGGAGc -3'
miRNA:   3'- -GCGgCGGCGG-UGG-----UGGCGGCU---------UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 23467 0.66 0.444723
Target:  5'- gGgCGCCGCCAaggUCAUCGCaGAcGGGGa -3'
miRNA:   3'- gCgGCGGCGGU---GGUGGCGgCUuCCUC- -5'
18334 5' -63.1 NC_004681.1 + 12596 0.66 0.444723
Target:  5'- uCGCCGuuGCUGCCuuCCGCggucaccuUGAAGGuGu -3'
miRNA:   3'- -GCGGCggCGGUGGu-GGCG--------GCUUCCuC- -5'
18334 5' -63.1 NC_004681.1 + 25120 0.66 0.439318
Target:  5'- uCGCCaagggugaagaccguGUCGCCACCcuuGCCGCCGAc---- -3'
miRNA:   3'- -GCGG---------------CGGCGGUGG---UGGCGGCUuccuc -5'
18334 5' -63.1 NC_004681.1 + 64237 0.66 0.439318
Target:  5'- gGCCGCUgGCaugaaauccccgaacCGCaCACCGCCG-AGGAa -3'
miRNA:   3'- gCGGCGG-CG---------------GUG-GUGGCGGCuUCCUc -5'
18334 5' -63.1 NC_004681.1 + 41053 0.66 0.435736
Target:  5'- gGCCauGCUGCagaUGCUGCUGGAGGAGa -3'
miRNA:   3'- gCGG--CGGCGgugGUGGCGGCUUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 16814 0.66 0.435736
Target:  5'- uGCCaUCGCUGCCACCGCCcgucauacccGGGAa -3'
miRNA:   3'- gCGGcGGCGGUGGUGGCGGcu--------UCCUc -5'
18334 5' -63.1 NC_004681.1 + 3013 0.66 0.433061
Target:  5'- uGCCGUCGCCcaGCCagGCCcccaggauguagggGUCGAgcGGGAGg -3'
miRNA:   3'- gCGGCGGCGG--UGG--UGG--------------CGGCU--UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 25110 0.66 0.426855
Target:  5'- gGCCGCgGacCCACC-CCGCUGGAGu-- -3'
miRNA:   3'- gCGGCGgC--GGUGGuGGCGGCUUCcuc -5'
18334 5' -63.1 NC_004681.1 + 14631 0.66 0.426855
Target:  5'- gCGCaucaagGUCGCCACCcguaUGCCGAuagAGGAGc -3'
miRNA:   3'- -GCGg-----CGGCGGUGGug--GCGGCU---UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 60556 0.66 0.418083
Target:  5'- aCGCCGCaCGCCucggGCCGCUGgCCGAc---- -3'
miRNA:   3'- -GCGGCG-GCGG----UGGUGGC-GGCUuccuc -5'
18334 5' -63.1 NC_004681.1 + 3911 0.66 0.418083
Target:  5'- gGuuGCCuCUACCACUGCCGGuaacgacaccgAGGGc -3'
miRNA:   3'- gCggCGGcGGUGGUGGCGGCU-----------UCCUc -5'
18334 5' -63.1 NC_004681.1 + 14687 0.66 0.418083
Target:  5'- uCGCCaGCCaGCuUGCCGgUGCCGAAGGcGa -3'
miRNA:   3'- -GCGG-CGG-CG-GUGGUgGCGGCUUCCuC- -5'
18334 5' -63.1 NC_004681.1 + 18826 0.66 0.415473
Target:  5'- uCGCCGCCGUCGCCcuuggcgauguucuGCUGCuCGAuguugacGAGa -3'
miRNA:   3'- -GCGGCGGCGGUGG--------------UGGCG-GCUuc-----CUC- -5'
18334 5' -63.1 NC_004681.1 + 51427 0.66 0.409421
Target:  5'- aCGCCacgacguaCGCCACCAUCGUC-AAGGAc -3'
miRNA:   3'- -GCGGcg------GCGGUGGUGGCGGcUUCCUc -5'
18334 5' -63.1 NC_004681.1 + 36782 0.66 0.409421
Target:  5'- gGCCGCUGgcCCGCCccCCGCUGAcuAGGcAGu -3'
miRNA:   3'- gCGGCGGC--GGUGGu-GGCGGCU--UCC-UC- -5'
18334 5' -63.1 NC_004681.1 + 39711 0.66 0.400871
Target:  5'- -uCCGuaGCCACCuccgguUCGCCGggGGuGg -3'
miRNA:   3'- gcGGCggCGGUGGu-----GGCGGCuuCCuC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.