miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18342 5' -54.5 NC_004681.1 + 50652 0.66 0.855
Target:  5'- cGCCaGCCACAGcuUCAGCGcGCGcucagcaaccGCGAUc -3'
miRNA:   3'- -CGG-CGGUGUCucAGUUGC-UGC----------UGCUA- -5'
18342 5' -54.5 NC_004681.1 + 30136 0.66 0.855
Target:  5'- gGCCgaugGCCGCGG---CGGCGAUGACGGUu -3'
miRNA:   3'- -CGG----CGGUGUCucaGUUGCUGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 52337 0.66 0.855
Target:  5'- aGUCGCCAcCGGccagguuggucaGGUCGGgGAUGGCGGg -3'
miRNA:   3'- -CGGCGGU-GUC------------UCAGUUgCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 6994 0.66 0.855
Target:  5'- gGUgGCCACGGAcaugccgugGUCGACGuCGAgCGGg -3'
miRNA:   3'- -CGgCGGUGUCU---------CAGUUGCuGCU-GCUa -5'
18342 5' -54.5 NC_004681.1 + 15688 0.66 0.855
Target:  5'- aGCaCGCCuCGGAgGUCAugGACaccuaccgGGCGAa -3'
miRNA:   3'- -CG-GCGGuGUCU-CAGUugCUG--------CUGCUa -5'
18342 5' -54.5 NC_004681.1 + 10123 0.66 0.846665
Target:  5'- cCCGCagUACGG-GUCcACGAUGGCGAc -3'
miRNA:   3'- cGGCG--GUGUCuCAGuUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 71360 0.66 0.846665
Target:  5'- uGCCGCUccguaAGAGUCAGCGACu----- -3'
miRNA:   3'- -CGGCGGug---UCUCAGUUGCUGcugcua -5'
18342 5' -54.5 NC_004681.1 + 13905 0.66 0.846665
Target:  5'- gGCCGCCAC--GGUCAACGAguuGCGu- -3'
miRNA:   3'- -CGGCGGUGucUCAGUUGCUgc-UGCua -5'
18342 5' -54.5 NC_004681.1 + 38318 0.66 0.846665
Target:  5'- cGCCGCCGCGGGacGUCuuCGGCcGCc-- -3'
miRNA:   3'- -CGGCGGUGUCU--CAGuuGCUGcUGcua -5'
18342 5' -54.5 NC_004681.1 + 9146 0.66 0.838114
Target:  5'- aCCGCCGCGGAGaUCGcggagaACGucuuCGACGc- -3'
miRNA:   3'- cGGCGGUGUCUC-AGU------UGCu---GCUGCua -5'
18342 5' -54.5 NC_004681.1 + 42832 0.66 0.838114
Target:  5'- cGCCGCCACGGuaaacGUCAGUGugG-CGc- -3'
miRNA:   3'- -CGGCGGUGUCu----CAGUUGCugCuGCua -5'
18342 5' -54.5 NC_004681.1 + 50162 0.66 0.820394
Target:  5'- cGUCGacCCGCAGgcAGUCGAUGGCGuCGGa -3'
miRNA:   3'- -CGGC--GGUGUC--UCAGUUGCUGCuGCUa -5'
18342 5' -54.5 NC_004681.1 + 32015 0.66 0.820394
Target:  5'- cGgCGCCGCGGGuGUCGGC-ACGGcCGGUg -3'
miRNA:   3'- -CgGCGGUGUCU-CAGUUGcUGCU-GCUA- -5'
18342 5' -54.5 NC_004681.1 + 9989 0.66 0.811243
Target:  5'- uGCgGCCGCaAGuucgaucuGGUCGAgGACGACGu- -3'
miRNA:   3'- -CGgCGGUG-UC--------UCAGUUgCUGCUGCua -5'
18342 5' -54.5 NC_004681.1 + 58242 0.67 0.802852
Target:  5'- aCCGCCAUGGAGUCuucgcuggccucacCGAaGACGAg -3'
miRNA:   3'- cGGCGGUGUCUCAGuu------------GCUgCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 62051 0.67 0.801911
Target:  5'- cGCUGCCGCccggcGAGUUcAUGACGAUGu- -3'
miRNA:   3'- -CGGCGGUGu----CUCAGuUGCUGCUGCua -5'
18342 5' -54.5 NC_004681.1 + 55492 0.67 0.801911
Target:  5'- aCCGCC-CAGcAGUgGACGACGuCGu- -3'
miRNA:   3'- cGGCGGuGUC-UCAgUUGCUGCuGCua -5'
18342 5' -54.5 NC_004681.1 + 3876 0.67 0.792408
Target:  5'- --aGCCcaguGCAGAcuucgcGUCAGCGGCGAUGAc -3'
miRNA:   3'- cggCGG----UGUCU------CAGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 25239 0.67 0.792408
Target:  5'- gGCgGCCAUGGcGcCcGCGGCGGCGGUu -3'
miRNA:   3'- -CGgCGGUGUCuCaGuUGCUGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 24547 0.67 0.792408
Target:  5'- cGuuGCCggACAGccGGUCAACGAUguugGGCGAg -3'
miRNA:   3'- -CggCGG--UGUC--UCAGUUGCUG----CUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.