miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18345 5' -58.9 NC_004681.1 + 18365 0.66 0.656836
Target:  5'- cGGuGGcGCCAUCGaCAUGGCaGgCCAGGc -3'
miRNA:   3'- -CCuCU-UGGUGGCcGUACCG-CgGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 39361 0.66 0.656835
Target:  5'- gGGAGuACUugACgCGGCGgcccuUGGCGCCCu-- -3'
miRNA:   3'- -CCUCuUGG--UG-GCCGU-----ACCGCGGGucc -5'
18345 5' -58.9 NC_004681.1 + 54671 0.66 0.656835
Target:  5'- cGGGGGGCaGCUGGCugAUGGUuCCCAccGGg -3'
miRNA:   3'- -CCUCUUGgUGGCCG--UACCGcGGGU--CC- -5'
18345 5' -58.9 NC_004681.1 + 33436 0.66 0.656835
Target:  5'- cGuGAugUGCgGGCG-GGUGCCCuGGa -3'
miRNA:   3'- cCuCUugGUGgCCGUaCCGCGGGuCC- -5'
18345 5' -58.9 NC_004681.1 + 18070 0.66 0.656835
Target:  5'- gGGAGuGGCCGCaugGGCugcGGgGCCCAccGGa -3'
miRNA:   3'- -CCUC-UUGGUGg--CCGua-CCgCGGGU--CC- -5'
18345 5' -58.9 NC_004681.1 + 51585 0.66 0.646419
Target:  5'- --cGAGCUGgCGGCAgcGGuCGCCCAGu -3'
miRNA:   3'- ccuCUUGGUgGCCGUa-CC-GCGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 18098 0.66 0.635991
Target:  5'- cGGcau-CC-CCGGCAUcGGCGCCCccGGc -3'
miRNA:   3'- -CCucuuGGuGGCCGUA-CCGCGGGu-CC- -5'
18345 5' -58.9 NC_004681.1 + 18113 0.66 0.635991
Target:  5'- --cGAGCCguACUGGCccGUGGCaUCCGGGg -3'
miRNA:   3'- ccuCUUGG--UGGCCG--UACCGcGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 22925 0.66 0.635991
Target:  5'- uGAGGAUCAUCGGaggcggGGuCGCCCcGGc -3'
miRNA:   3'- cCUCUUGGUGGCCgua---CC-GCGGGuCC- -5'
18345 5' -58.9 NC_004681.1 + 21413 0.66 0.635991
Target:  5'- aGGAGAGCguCCugGGCAaggugcUGGCGCCg--- -3'
miRNA:   3'- -CCUCUUGguGG--CCGU------ACCGCGGgucc -5'
18345 5' -58.9 NC_004681.1 + 10313 0.66 0.635991
Target:  5'- cGGGGAGCCaggGCCaGGUGUGGCcgguGCuccacucggagCCGGGg -3'
miRNA:   3'- -CCUCUUGG---UGG-CCGUACCG----CG-----------GGUCC- -5'
18345 5' -58.9 NC_004681.1 + 9457 0.66 0.635991
Target:  5'- -nGGGAUCAgCGGgGUGGUGacaaCCGGGa -3'
miRNA:   3'- ccUCUUGGUgGCCgUACCGCg---GGUCC- -5'
18345 5' -58.9 NC_004681.1 + 16481 0.66 0.634948
Target:  5'- uGGAGGugGCCGa-GGCAacccacuUGGCGCCCu-- -3'
miRNA:   3'- -CCUCU--UGGUggCCGU-------ACCGCGGGucc -5'
18345 5' -58.9 NC_004681.1 + 24522 0.66 0.634948
Target:  5'- cGAG-AUCACCgaGGCAuacgccuacgagcUGGUGCCCGuGGg -3'
miRNA:   3'- cCUCuUGGUGG--CCGU-------------ACCGCGGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 18380 0.66 0.625559
Target:  5'- cGAGGACUG-CGGcCGUGccGCGCCCGGa -3'
miRNA:   3'- cCUCUUGGUgGCC-GUAC--CGCGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 14780 0.66 0.615134
Target:  5'- cGGAcgcccuGGCCAUCcugaaGGC-UGGCGCCCAGc -3'
miRNA:   3'- -CCUc-----UUGGUGG-----CCGuACCGCGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 16482 0.66 0.615134
Target:  5'- --cGGACUACuCGGCGccGCGCCCcGGc -3'
miRNA:   3'- ccuCUUGGUG-GCCGUacCGCGGGuCC- -5'
18345 5' -58.9 NC_004681.1 + 19246 0.66 0.615133
Target:  5'- aGGAGAACUugcCCaGCuucuugGGgGUCCAGGc -3'
miRNA:   3'- -CCUCUUGGu--GGcCGua----CCgCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 13692 0.66 0.60472
Target:  5'- uGGAcg-UCAUUGGCGUGGCcGCCCGcGGc -3'
miRNA:   3'- -CCUcuuGGUGGCCGUACCG-CGGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 18482 0.67 0.594329
Target:  5'- cGGuG-GCCAgcugaUCGGUAUcGGCGCCgAGGg -3'
miRNA:   3'- -CCuCuUGGU-----GGCCGUA-CCGCGGgUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.