miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18348 5' -55.8 NC_004681.1 + 3126 0.66 0.759303
Target:  5'- ---cGCC-GCGGGUGcgGGCaUugCCGCu -3'
miRNA:   3'- cuuuCGGuCGCCCGUa-UCG-AugGGCG- -5'
18348 5' -55.8 NC_004681.1 + 24953 0.66 0.759303
Target:  5'- aGGGAGCCuuGGC-GGCc--GCcGCCCGCg -3'
miRNA:   3'- -CUUUCGG--UCGcCCGuauCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 59797 0.66 0.759303
Target:  5'- -cAGGCCgcacucccagcAGgGGGCGUGGCgGCgCUGCc -3'
miRNA:   3'- cuUUCGG-----------UCgCCCGUAUCGaUG-GGCG- -5'
18348 5' -55.8 NC_004681.1 + 7462 0.66 0.749115
Target:  5'- --cGGCC-GCGGGCuUGGCgggagGCuucgCCGCg -3'
miRNA:   3'- cuuUCGGuCGCCCGuAUCGa----UG----GGCG- -5'
18348 5' -55.8 NC_004681.1 + 30140 0.66 0.738812
Target:  5'- --cGGCCuGUGGGUcgGGCUcaggcggcgcGgCCGCg -3'
miRNA:   3'- cuuUCGGuCGCCCGuaUCGA----------UgGGCG- -5'
18348 5' -55.8 NC_004681.1 + 60657 0.66 0.737776
Target:  5'- --cGGCCAGCGgcccgaggcgugcGGCGUGaCUACCCu- -3'
miRNA:   3'- cuuUCGGUCGC-------------CCGUAUcGAUGGGcg -5'
18348 5' -55.8 NC_004681.1 + 69217 0.66 0.728404
Target:  5'- gGGAGGCCAgggcGCGGGCGaGGCgg--CGCu -3'
miRNA:   3'- -CUUUCGGU----CGCCCGUaUCGauggGCG- -5'
18348 5' -55.8 NC_004681.1 + 31279 0.66 0.728404
Target:  5'- ---uGCCAGCGGauugauugccGCGaauCUGCCCGCc -3'
miRNA:   3'- cuuuCGGUCGCC----------CGUaucGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 25061 0.66 0.717902
Target:  5'- aGAGGGCgGcGCGGGC--GGC-ACCuCGCu -3'
miRNA:   3'- -CUUUCGgU-CGCCCGuaUCGaUGG-GCG- -5'
18348 5' -55.8 NC_004681.1 + 25171 0.66 0.717902
Target:  5'- aGGAGGCUgAGCGaGGU---GCcGCCCGCg -3'
miRNA:   3'- -CUUUCGG-UCGC-CCGuauCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 7311 0.66 0.716847
Target:  5'- ---cGCCAGCGacguuccacccccGGCAcccggGGCUGacCCCGCc -3'
miRNA:   3'- cuuuCGGUCGC-------------CCGUa----UCGAU--GGGCG- -5'
18348 5' -55.8 NC_004681.1 + 30341 0.67 0.711561
Target:  5'- --cGGCCgccgccgcuguGGCGGGCGaucuuguagacguGCUugCCGCa -3'
miRNA:   3'- cuuUCGG-----------UCGCCCGUau-----------CGAugGGCG- -5'
18348 5' -55.8 NC_004681.1 + 52845 0.67 0.707318
Target:  5'- -uGAGCUucCGGGCGgaaGGCUggccaucggccuGCCCGCg -3'
miRNA:   3'- cuUUCGGucGCCCGUa--UCGA------------UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 49585 0.67 0.707318
Target:  5'- aGGAccCCGGCgacuGGGCAguagGGCUugCCGUc -3'
miRNA:   3'- -CUUucGGUCG----CCCGUa---UCGAugGGCG- -5'
18348 5' -55.8 NC_004681.1 + 7575 0.67 0.696661
Target:  5'- gGAcGGCCGGgGaGGCcgugAUGGCaccuacGCCCGCg -3'
miRNA:   3'- -CUuUCGGUCgC-CCG----UAUCGa-----UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 16629 0.67 0.696661
Target:  5'- uGGAGgCGGCGGGCAU--CaGCCCGg -3'
miRNA:   3'- cUUUCgGUCGCCCGUAucGaUGGGCg -5'
18348 5' -55.8 NC_004681.1 + 4034 0.67 0.685944
Target:  5'- -cAGGCCAGCGaagcccucGGUGUcGUUACCgGCa -3'
miRNA:   3'- cuUUCGGUCGC--------CCGUAuCGAUGGgCG- -5'
18348 5' -55.8 NC_004681.1 + 33750 0.67 0.685944
Target:  5'- gGAAgcGGCCgAGCGcGGCugggAGCU-UCCGCa -3'
miRNA:   3'- -CUU--UCGG-UCGC-CCGua--UCGAuGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 28640 0.67 0.675177
Target:  5'- ---uGCCuGCGGGCuugaugaacUGGUUugCCGUg -3'
miRNA:   3'- cuuuCGGuCGCCCGu--------AUCGAugGGCG- -5'
18348 5' -55.8 NC_004681.1 + 23596 0.67 0.675177
Target:  5'- cGAGGGCa--CGGGgGUGGCcAUCCGCc -3'
miRNA:   3'- -CUUUCGgucGCCCgUAUCGaUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.