miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18431 5' -60.8 NC_004681.1 + 17913 0.66 0.557223
Target:  5'- gCCUUGCgcggCCGCCGcguugauGUCGGCCUgcgugggcugcggAACCu -3'
miRNA:   3'- gGGAACG----GGCGGUc------CAGCCGGG-------------UUGG- -5'
18431 5' -60.8 NC_004681.1 + 45479 0.66 0.548158
Target:  5'- gCCCUUGaggugcuccCCCGCCuuggAGGUgcgggaguaUGGCUCGACg -3'
miRNA:   3'- -GGGAAC---------GGGCGG----UCCA---------GCCGGGUUGg -5'
18431 5' -60.8 NC_004681.1 + 17528 0.66 0.548158
Target:  5'- gCgUUGCCCGuCCAcauGUUGGCgCCAcCCg -3'
miRNA:   3'- gGgAACGGGC-GGUc--CAGCCG-GGUuGG- -5'
18431 5' -60.8 NC_004681.1 + 45064 0.66 0.548158
Target:  5'- gCCgaaGCauCCGCCGcGGUCgaGGCCCucGCCg -3'
miRNA:   3'- gGGaa-CG--GGCGGU-CCAG--CCGGGu-UGG- -5'
18431 5' -60.8 NC_004681.1 + 6455 0.66 0.547154
Target:  5'- gUCUccGCCCGCCucGGUgcCGGgacuaucCCCGACCa -3'
miRNA:   3'- -GGGaaCGGGCGGu-CCA--GCC-------GGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 51438 0.66 0.544144
Target:  5'- uCCCUUGCuuGCCGagcuccgcGGcgacggugaugacgUCGGCggacucaCCGGCCa -3'
miRNA:   3'- -GGGAACGggCGGU--------CC--------------AGCCG-------GGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 40230 0.66 0.538141
Target:  5'- gCC-UGCCUGucCCGGG-CGGUcaCCGACCu -3'
miRNA:   3'- gGGaACGGGC--GGUCCaGCCG--GGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 57768 0.66 0.538141
Target:  5'- gUCgaGCgCUGCgCGGGUCaGUCCAACCc -3'
miRNA:   3'- gGGaaCG-GGCG-GUCCAGcCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 60626 0.66 0.527196
Target:  5'- aCCCUucgGCCCGUCucGGUCGggaagaugugaccGCCauuGCCg -3'
miRNA:   3'- -GGGAa--CGGGCGGu-CCAGC-------------CGGgu-UGG- -5'
18431 5' -60.8 NC_004681.1 + 13524 0.66 0.518303
Target:  5'- gCCCU--CCCGCCGuGGUUcGCUCcGCCa -3'
miRNA:   3'- -GGGAacGGGCGGU-CCAGcCGGGuUGG- -5'
18431 5' -60.8 NC_004681.1 + 6303 0.66 0.518303
Target:  5'- ----gGCCUGCCGcGGUCGGaugaCCCGaagGCCg -3'
miRNA:   3'- gggaaCGGGCGGU-CCAGCC----GGGU---UGG- -5'
18431 5' -60.8 NC_004681.1 + 27243 0.66 0.518303
Target:  5'- aCCCguaGCCCGCCgagaacgcuugcAGGaCGaGCCCGgaugagcuuGCCu -3'
miRNA:   3'- -GGGaa-CGGGCGG------------UCCaGC-CGGGU---------UGG- -5'
18431 5' -60.8 NC_004681.1 + 49648 0.66 0.518303
Target:  5'- gCC-UGCCCGCgGGGgaaGGCCagGGCg -3'
miRNA:   3'- gGGaACGGGCGgUCCag-CCGGg-UUGg -5'
18431 5' -60.8 NC_004681.1 + 48133 0.66 0.508493
Target:  5'- aUCCagaGCCC-CCAGGcggggGGCUCAACCa -3'
miRNA:   3'- -GGGaa-CGGGcGGUCCag---CCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 28219 0.66 0.508493
Target:  5'- gCCgUUGCCCGCgGGGccgucgcUGGuCCCGuuguuGCCg -3'
miRNA:   3'- -GGgAACGGGCGgUCCa------GCC-GGGU-----UGG- -5'
18431 5' -60.8 NC_004681.1 + 18212 0.66 0.508493
Target:  5'- aCCCggUGCCUgGCCGGG--GGCgCCGauGCCg -3'
miRNA:   3'- -GGGa-ACGGG-CGGUCCagCCG-GGU--UGG- -5'
18431 5' -60.8 NC_004681.1 + 45043 0.67 0.498762
Target:  5'- gCCCgaGCUCGCgGuGG-CGGCUCcACCg -3'
miRNA:   3'- -GGGaaCGGGCGgU-CCaGCCGGGuUGG- -5'
18431 5' -60.8 NC_004681.1 + 62742 0.67 0.498762
Target:  5'- aUCCUgugUGCUCuCCuuGGGUCGGUUCAGCUu -3'
miRNA:   3'- -GGGA---ACGGGcGG--UCCAGCCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 56332 0.67 0.498762
Target:  5'- gCCCUcuugcaGCUCGCuCGGGUCgacgccGGUCCAgGCCa -3'
miRNA:   3'- -GGGAa-----CGGGCG-GUCCAG------CCGGGU-UGG- -5'
18431 5' -60.8 NC_004681.1 + 14913 0.67 0.489115
Target:  5'- gCCCacGCCCucgguacggGCCAGcUgGGCgCCAGCCu -3'
miRNA:   3'- -GGGaaCGGG---------CGGUCcAgCCG-GGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.