miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18452 5' -53.5 NC_004681.1 + 8240 0.66 0.884205
Target:  5'- gGCCGagGuCGAGgcgcACgaGCGCGCGCa -3'
miRNA:   3'- -UGGUagCuGUUUa---UGgaCGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 66975 0.66 0.884205
Target:  5'- cAUCGggGACAGucacgucgGCCUGCaCGCGCGc -3'
miRNA:   3'- -UGGUagCUGUUua------UGGACGcGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 54338 0.66 0.884205
Target:  5'- cACCugUGGCcuAAGUACCUGCGCaaGUGg -3'
miRNA:   3'- -UGGuaGCUG--UUUAUGGACGCGcgCGC- -5'
18452 5' -53.5 NC_004681.1 + 22743 0.66 0.876673
Target:  5'- -aCGUaGGCGAucUGCUUGCGCGCgGCGc -3'
miRNA:   3'- ugGUAgCUGUUu-AUGGACGCGCG-CGC- -5'
18452 5' -53.5 NC_004681.1 + 28280 0.66 0.876673
Target:  5'- aGCCAUCGcCAccgucACCUGCGUcaGUGCc -3'
miRNA:   3'- -UGGUAGCuGUuua--UGGACGCG--CGCGc -5'
18452 5' -53.5 NC_004681.1 + 72967 0.66 0.876673
Target:  5'- uCCAccCGGauCAAGUugCcGCGCGCGUGg -3'
miRNA:   3'- uGGUa-GCU--GUUUAugGaCGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 14987 0.66 0.876673
Target:  5'- -aCGUCGGCG---ACCUGCGagGCGgGg -3'
miRNA:   3'- ugGUAGCUGUuuaUGGACGCg-CGCgC- -5'
18452 5' -53.5 NC_004681.1 + 61643 0.66 0.876673
Target:  5'- gACCAUCGcCAAG---CUGCGCGCa-- -3'
miRNA:   3'- -UGGUAGCuGUUUaugGACGCGCGcgc -5'
18452 5' -53.5 NC_004681.1 + 37722 0.66 0.876673
Target:  5'- gAUCGUCG-Cucu--CCUGUGUGCGCa -3'
miRNA:   3'- -UGGUAGCuGuuuauGGACGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 13552 0.66 0.868893
Target:  5'- cGCCAUCaugGGCGAAgagACgUaCGCGCGCu -3'
miRNA:   3'- -UGGUAG---CUGUUUa--UGgAcGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 70402 0.66 0.860871
Target:  5'- cGCUuUCGGau--UGCCacgcGCGCGCGCGa -3'
miRNA:   3'- -UGGuAGCUguuuAUGGa---CGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 7309 0.66 0.855944
Target:  5'- cGCCGUuacCGGCAccggccgccuucucgAGUACCUucuCGUGCGCGa -3'
miRNA:   3'- -UGGUA---GCUGU---------------UUAUGGAc--GCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 39014 0.66 0.852614
Target:  5'- -aCGUCGACG---GCCUGCuggugGUGCGCc -3'
miRNA:   3'- ugGUAGCUGUuuaUGGACG-----CGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 5748 0.66 0.852614
Target:  5'- gUCGUCGGCGAAgcucACCaGCuGCGUGCc -3'
miRNA:   3'- uGGUAGCUGUUUa---UGGaCG-CGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 26413 0.67 0.84413
Target:  5'- -gCGUCGACAcaaucgACCcgGCGCaGUGCGg -3'
miRNA:   3'- ugGUAGCUGUuua---UGGa-CGCG-CGCGC- -5'
18452 5' -53.5 NC_004681.1 + 38915 0.67 0.838934
Target:  5'- cGCCGuaggcccggauggucUCGGCGG--ACUUGCGCGCGg- -3'
miRNA:   3'- -UGGU---------------AGCUGUUuaUGGACGCGCGCgc -5'
18452 5' -53.5 NC_004681.1 + 14445 0.67 0.835427
Target:  5'- cGCCcgCGaggcggagGCGAAcGCC-GCGCGCGCc -3'
miRNA:   3'- -UGGuaGC--------UGUUUaUGGaCGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 16767 0.67 0.835427
Target:  5'- uGCCuGUCGACAcgucGGUGCCUG-GCG-GCa -3'
miRNA:   3'- -UGG-UAGCUGU----UUAUGGACgCGCgCGc -5'
18452 5' -53.5 NC_004681.1 + 19525 0.67 0.835427
Target:  5'- uGCCAUCGgugccGCAGAcGCCUGCGUccucGuCGCc -3'
miRNA:   3'- -UGGUAGC-----UGUUUaUGGACGCG----C-GCGc -5'
18452 5' -53.5 NC_004681.1 + 17901 0.67 0.835427
Target:  5'- cGCCgcGUUGAUGucgGCCUGCGUGgGCu -3'
miRNA:   3'- -UGG--UAGCUGUuuaUGGACGCGCgCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.