miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18474 5' -65.4 NC_004681.1 + 33393 0.66 0.33679
Target:  5'- uGUGGCAccugaACCGCaUCGGCGCCaaGAc -3'
miRNA:   3'- gCGCCGU-----UGGCGgGGCCGUGGggCUa -5'
18474 5' -65.4 NC_004681.1 + 32300 0.66 0.33679
Target:  5'- -aCGGCGACCcccaGCCuuGGCGCUUCGu- -3'
miRNA:   3'- gcGCCGUUGG----CGGggCCGUGGGGCua -5'
18474 5' -65.4 NC_004681.1 + 8289 0.66 0.332321
Target:  5'- gGUGGCGcggacGCCGCCaaggaCGGCcuggacaacgacauCCCCGAg -3'
miRNA:   3'- gCGCCGU-----UGGCGGg----GCCGu-------------GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 26229 0.66 0.329365
Target:  5'- gGCGGCGAugcCCGCCCCcuacgcgguggGGCAugacggacuCCUCGGc -3'
miRNA:   3'- gCGCCGUU---GGCGGGG-----------CCGU---------GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 24190 0.66 0.329365
Target:  5'- gGCuGGCGccggaaccuuGCUgGCCCaCGGCGCCaCCGAc -3'
miRNA:   3'- gCG-CCGU----------UGG-CGGG-GCCGUGG-GGCUa -5'
18474 5' -65.4 NC_004681.1 + 20132 0.66 0.329365
Target:  5'- gCGCGGCcacCCGUCCUGGUcUCCgCGGUu -3'
miRNA:   3'- -GCGCCGuu-GGCGGGGCCGuGGG-GCUA- -5'
18474 5' -65.4 NC_004681.1 + 66071 0.66 0.322062
Target:  5'- gCGCGGCAGCCuUCUCGGC-CUUCGu- -3'
miRNA:   3'- -GCGCCGUUGGcGGGGCCGuGGGGCua -5'
18474 5' -65.4 NC_004681.1 + 32234 0.66 0.322062
Target:  5'- aGCGGCAgcGCgGCCUCGuGUcuaGCCCgGAc -3'
miRNA:   3'- gCGCCGU--UGgCGGGGC-CG---UGGGgCUa -5'
18474 5' -65.4 NC_004681.1 + 7318 0.66 0.322062
Target:  5'- gCGCGGUGucGCCGUUaCCGGCACCggCCGc- -3'
miRNA:   3'- -GCGCCGU--UGGCGG-GGCCGUGG--GGCua -5'
18474 5' -65.4 NC_004681.1 + 16195 0.66 0.322062
Target:  5'- gGCGGCuguGCgCGCCgCGGUggugacGCCaCCGAg -3'
miRNA:   3'- gCGCCGu--UG-GCGGgGCCG------UGG-GGCUa -5'
18474 5' -65.4 NC_004681.1 + 21434 0.66 0.31488
Target:  5'- uGCuGGC-GCCGuuccucaaCCCCGGCAaugccuacgcCCCCGAg -3'
miRNA:   3'- gCG-CCGuUGGC--------GGGGCCGU----------GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 8562 0.66 0.31488
Target:  5'- uCGaCGGguACCuucgcCCCCGGCAUCCUGc- -3'
miRNA:   3'- -GC-GCCguUGGc----GGGGCCGUGGGGCua -5'
18474 5' -65.4 NC_004681.1 + 49743 0.66 0.31488
Target:  5'- uCGuUGGC--CCGCuCCCGGCACUCCu-- -3'
miRNA:   3'- -GC-GCCGuuGGCG-GGGCCGUGGGGcua -5'
18474 5' -65.4 NC_004681.1 + 8512 0.66 0.30782
Target:  5'- uCGCGGacggugaGACCGCCCCcgcGGCcaucggccagaACCCCu-- -3'
miRNA:   3'- -GCGCCg------UUGGCGGGG---CCG-----------UGGGGcua -5'
18474 5' -65.4 NC_004681.1 + 60272 0.66 0.30782
Target:  5'- aCGCcuGGUcACUGCCCCGGCGa-CUGAUg -3'
miRNA:   3'- -GCG--CCGuUGGCGGGGCCGUggGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 57020 0.66 0.300882
Target:  5'- cCGCGGUAGCCGCUcucauugaCCGGCcaauCUCCu-- -3'
miRNA:   3'- -GCGCCGUUGGCGG--------GGCCGu---GGGGcua -5'
18474 5' -65.4 NC_004681.1 + 2736 0.66 0.294065
Target:  5'- gGCuaGGguGCCGUCCgCGGCGugaacguaauCCCCGAc -3'
miRNA:   3'- gCG--CCguUGGCGGG-GCCGU----------GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 18189 0.66 0.294065
Target:  5'- gGCGGUccugGAgCGCcuCCCGGCGcacCCCCGGg -3'
miRNA:   3'- gCGCCG----UUgGCG--GGGCCGU---GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 18051 0.66 0.29339
Target:  5'- gCGgGGCccaccggAGCCGCCCuCGGCACUCa--- -3'
miRNA:   3'- -GCgCCG-------UUGGCGGG-GCCGUGGGgcua -5'
18474 5' -65.4 NC_004681.1 + 7165 0.67 0.287369
Target:  5'- gGgGGguGCCGUCCUucauGGCGCCgCGGUc -3'
miRNA:   3'- gCgCCguUGGCGGGG----CCGUGGgGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.