miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 5' -62.5 NC_004681.1 + 9400 0.66 0.44277
Target:  5'- cGGGuuGCcguaGGCGUUGCCGaagaaGuugccgcccauguacUGGCCAu -3'
miRNA:   3'- -CCCggCGa---CCGCGAUGGCg----U---------------ACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 70474 0.66 0.439112
Target:  5'- cGGCCGC--GCGUagacgucaGCCGUAUGGUCAc -3'
miRNA:   3'- cCCGGCGacCGCGa-------UGGCGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 5371 0.66 0.436381
Target:  5'- -uGCCGCcguagagcgagaauUGGCGCUccaACUGCAUGcCCAc -3'
miRNA:   3'- ccCGGCG--------------ACCGCGA---UGGCGUACcGGU- -5'
18524 5' -62.5 NC_004681.1 + 48309 0.66 0.42109
Target:  5'- aGGGCCaGCUuguaGGCGC-GCUuCuUGGCCAg -3'
miRNA:   3'- -CCCGG-CGA----CCGCGaUGGcGuACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 61741 0.66 0.42109
Target:  5'- aGGCCGCccucGCGCgccaccagACCGCGgccgccaucGGCCAg -3'
miRNA:   3'- cCCGGCGac--CGCGa-------UGGCGUa--------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 16327 0.66 0.412248
Target:  5'- cGGGUCGUUGGgauuucCGCcgAagGCGUGGCCGu -3'
miRNA:   3'- -CCCGGCGACC------GCGa-UggCGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 22279 0.66 0.412248
Target:  5'- uGGCgGCgugGGCGCccugcCCGuCAUGGCgCAg -3'
miRNA:   3'- cCCGgCGa--CCGCGau---GGC-GUACCG-GU- -5'
18524 5' -62.5 NC_004681.1 + 11960 0.66 0.412248
Target:  5'- cGGuaCGCUGcGCGC-GCCGCGacuGCCAa -3'
miRNA:   3'- -CCcgGCGAC-CGCGaUGGCGUac-CGGU- -5'
18524 5' -62.5 NC_004681.1 + 69864 0.66 0.403522
Target:  5'- cGGCCGCUGGCaaacCUACUugGCGguagGGUUAg -3'
miRNA:   3'- cCCGGCGACCGc---GAUGG--CGUa---CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 62623 0.66 0.403522
Target:  5'- cGGuGUCGgaGGCgGCUGCCagggugccCAUGGCCu -3'
miRNA:   3'- -CC-CGGCgaCCG-CGAUGGc-------GUACCGGu -5'
18524 5' -62.5 NC_004681.1 + 70932 0.66 0.398342
Target:  5'- cGGCCGCugagcguggagaccgUGacacggugcGCGCUACCGCugaGGCUAu -3'
miRNA:   3'- cCCGGCG---------------AC---------CGCGAUGGCGua-CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 37160 0.66 0.398342
Target:  5'- aGGCCGCUGGgaugaGCcACCccaucaccgacccugGCgAUGGCCGg -3'
miRNA:   3'- cCCGGCGACCg----CGaUGG---------------CG-UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 32230 0.66 0.394913
Target:  5'- uGGUCGUUGGCGUggGCCGCcgcGGUg- -3'
miRNA:   3'- cCCGGCGACCGCGa-UGGCGua-CCGgu -5'
18524 5' -62.5 NC_004681.1 + 15889 0.66 0.394912
Target:  5'- cGGCCGCgUGG-GUcACCGUgaagaucgccGUGGCCGc -3'
miRNA:   3'- cCCGGCG-ACCgCGaUGGCG----------UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 49420 0.67 0.386423
Target:  5'- aGGCCGaCUGGaauCGggACUGCAccGGCCAg -3'
miRNA:   3'- cCCGGC-GACC---GCgaUGGCGUa-CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 30152 0.67 0.386423
Target:  5'- cGGGCUcagGC-GGCGCgGCCGCggaGUGGaCCu -3'
miRNA:   3'- -CCCGG---CGaCCGCGaUGGCG---UACC-GGu -5'
18524 5' -62.5 NC_004681.1 + 59779 0.67 0.378056
Target:  5'- gGGGgCGUggcGGCGCUGCCauguUGGCUg -3'
miRNA:   3'- -CCCgGCGa--CCGCGAUGGcgu-ACCGGu -5'
18524 5' -62.5 NC_004681.1 + 7462 0.67 0.369811
Target:  5'- cGGCCGCgGGCuuggcgggagGCUucGCCGCGgcggcggGGUCAg -3'
miRNA:   3'- cCCGGCGaCCG----------CGA--UGGCGUa------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 45592 0.67 0.361689
Target:  5'- aGGUgGCcGGUGCcuccuCCGCGUcGGCCAa -3'
miRNA:   3'- cCCGgCGaCCGCGau---GGCGUA-CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 3048 0.67 0.361689
Target:  5'- gGGGUccuCGCUGGUGaacucgGCgCGCGUGGCg- -3'
miRNA:   3'- -CCCG---GCGACCGCga----UG-GCGUACCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.