Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18530 | 5' | -61 | NC_004681.1 | + | 48659 | 0.66 | 0.492361 |
Target: 5'- cCUCCACGCU-GGCGGgaaCCcugGCGGGCc- -3' miRNA: 3'- aGAGGUGCGAgUCGCC---GG---CGCUCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 18388 | 0.66 | 0.492361 |
Target: 5'- --gCCAgGC--GGCGGCCGCGgcGGCAa -3' miRNA: 3'- agaGGUgCGagUCGCCGGCGC--UCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 17427 | 0.66 | 0.482572 |
Target: 5'- gUCgCCGCGCUgauccugcgugUAGCGucCCGCGGGCAc -3' miRNA: 3'- -AGaGGUGCGA-----------GUCGCc-GGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 13227 | 0.66 | 0.482572 |
Target: 5'- --gCCACGaagGGCGGUgGCGGGCAg -3' miRNA: 3'- agaGGUGCgagUCGCCGgCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 68872 | 0.66 | 0.47288 |
Target: 5'- --cCCACGCUCuacUGGCCGCG-GCc- -3' miRNA: 3'- agaGGUGCGAGuc-GCCGGCGCuCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 58750 | 0.66 | 0.463285 |
Target: 5'- --cCCGCgGCgcaGGCGGCCGUGGcGCAg -3' miRNA: 3'- agaGGUG-CGag-UCGCCGGCGCU-CGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 13577 | 0.66 | 0.453794 |
Target: 5'- ---gCGCGCUUcaaGGCCGCGGGCGg -3' miRNA: 3'- agagGUGCGAGucgCCGGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 39700 | 0.66 | 0.452851 |
Target: 5'- aCUCCACGCucaaauUCAGuCGGUCgaauucguccgauGCGAGCu- -3' miRNA: 3'- aGAGGUGCG------AGUC-GCCGG-------------CGCUCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 49335 | 0.66 | 0.44441 |
Target: 5'- gUCcgCCACGg-CGGC-GCCGCGGGCGc -3' miRNA: 3'- -AGa-GGUGCgaGUCGcCGGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 51727 | 0.66 | 0.44441 |
Target: 5'- --aCCugGUggucgUCGGCGGCCgccccggcGCGGGCAa -3' miRNA: 3'- agaGGugCG-----AGUCGCCGG--------CGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 75486 | 0.66 | 0.44441 |
Target: 5'- aCUaCC-CGCUCAGCaGaCGCGAGCu- -3' miRNA: 3'- aGA-GGuGCGAGUCGcCgGCGCUCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 51996 | 0.66 | 0.443477 |
Target: 5'- uUCUCCAUGCU--GCGGCCaugaucuGCGAGa-- -3' miRNA: 3'- -AGAGGUGCGAguCGCCGG-------CGCUCgua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 11633 | 0.67 | 0.438832 |
Target: 5'- -aUCCACGCgaagguggacccagUAGCgGGCCGUGuAGCAc -3' miRNA: 3'- agAGGUGCGa-------------GUCG-CCGGCGC-UCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 44683 | 0.67 | 0.435135 |
Target: 5'- ------aGUgCGGCGGCCGCGAGCGc -3' miRNA: 3'- agaggugCGaGUCGCCGGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 57902 | 0.67 | 0.435135 |
Target: 5'- uUCgCCAC-CUCGGCGGC-GCGGcGCGUg -3' miRNA: 3'- -AGaGGUGcGAGUCGCCGgCGCU-CGUA- -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 22619 | 0.67 | 0.434214 |
Target: 5'- uUCUCCAcggacacCGCgggCAGC-GCCGCGcGCAa -3' miRNA: 3'- -AGAGGU-------GCGa--GUCGcCGGCGCuCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 36290 | 0.67 | 0.425973 |
Target: 5'- --gCCGagGUUgAGCGGCUGCGGGCGc -3' miRNA: 3'- agaGGUg-CGAgUCGCCGGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 37650 | 0.67 | 0.420532 |
Target: 5'- gCUCCGacuucugcggggccuCGC-CAGCGGCCGCGcGUc- -3' miRNA: 3'- aGAGGU---------------GCGaGUCGCCGGCGCuCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 33184 | 0.67 | 0.416927 |
Target: 5'- gUUCCACgacauGCUCGGCcuGGCCGUGAaCAUg -3' miRNA: 3'- aGAGGUG-----CGAGUCG--CCGGCGCUcGUA- -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 69760 | 0.67 | 0.399193 |
Target: 5'- cCUaCCGCcaaguagguuuGC-CAGCGGCCGCGcGCAc -3' miRNA: 3'- aGA-GGUG-----------CGaGUCGCCGGCGCuCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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