miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18534 5' -59.2 NC_004681.1 + 36191 0.66 0.609602
Target:  5'- -gCGCC-CG-CAGCCgcUCAaCCUCGGCc -3'
miRNA:   3'- agGCGGaGCuGUCGG--AGUcGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 70006 0.66 0.609602
Target:  5'- ---aCCUagagGACAGCCUCAGUCgguaUCGGCu -3'
miRNA:   3'- aggcGGAg---CUGUCGGAGUCGG----AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 31315 0.66 0.609602
Target:  5'- aUUCGCCUgG-UGGUCgCAGCCUaCGGCu -3'
miRNA:   3'- -AGGCGGAgCuGUCGGaGUCGGA-GUCG- -5'
18534 5' -59.2 NC_004681.1 + 19162 0.66 0.609602
Target:  5'- -aUGCCUCGACAGUga-AGUcgagCUCGGCg -3'
miRNA:   3'- agGCGGAGCUGUCGgagUCG----GAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 27927 0.66 0.599098
Target:  5'- --gGCCUCGGCGGCa-CGGCa-CGGCu -3'
miRNA:   3'- aggCGGAGCUGUCGgaGUCGgaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 6814 0.66 0.599098
Target:  5'- cCCGUCgauggaccgUGACGGCgaCAGCCUgaAGCg -3'
miRNA:   3'- aGGCGGa--------GCUGUCGgaGUCGGAg-UCG- -5'
18534 5' -59.2 NC_004681.1 + 30673 0.66 0.599098
Target:  5'- aCCGCCUUGGCGcuugcGCCgguaGGaCUCGGUg -3'
miRNA:   3'- aGGCGGAGCUGU-----CGGag--UCgGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 5300 0.66 0.58862
Target:  5'- aUCUGUggCGACAG-CUCGGCCaUGGCg -3'
miRNA:   3'- -AGGCGgaGCUGUCgGAGUCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 11479 0.66 0.58862
Target:  5'- aUCCGCUcguggacuUCGuCAGCCaggucgcCAGCCUCAu- -3'
miRNA:   3'- -AGGCGG--------AGCuGUCGGa------GUCGGAGUcg -5'
18534 5' -59.2 NC_004681.1 + 12367 0.66 0.58862
Target:  5'- aCCGUCUCG-CAGaCCUCGGguggcaccaccaCCgCGGCg -3'
miRNA:   3'- aGGCGGAGCuGUC-GGAGUC------------GGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 7440 0.66 0.578175
Target:  5'- cUUCGCCgCGGCGGCggggUCAGCCcCGGg -3'
miRNA:   3'- -AGGCGGaGCUGUCGg---AGUCGGaGUCg -5'
18534 5' -59.2 NC_004681.1 + 14563 0.66 0.578175
Target:  5'- aCCGCCaCcACGGCCgCAGUCgccuUCGGCa -3'
miRNA:   3'- aGGCGGaGcUGUCGGaGUCGG----AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 62533 0.66 0.578175
Target:  5'- gCCGCCUcCGACAccGUCUa--CCUCGGUg -3'
miRNA:   3'- aGGCGGA-GCUGU--CGGAgucGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 42275 0.66 0.567771
Target:  5'- -gCGCCUUcACGGCCUggaagaaGGCC-CAGCu -3'
miRNA:   3'- agGCGGAGcUGUCGGAg------UCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 70709 0.66 0.557416
Target:  5'- aUUGCC-CGACAGaguCCUCAGCCau-GCg -3'
miRNA:   3'- aGGCGGaGCUGUC---GGAGUCGGaguCG- -5'
18534 5' -59.2 NC_004681.1 + 3074 0.66 0.557416
Target:  5'- gCUGCCUCGAUGGCCgcgaauaucUCGGgguCCUC-GCu -3'
miRNA:   3'- aGGCGGAGCUGUCGG---------AGUC---GGAGuCG- -5'
18534 5' -59.2 NC_004681.1 + 42421 0.66 0.557416
Target:  5'- cCCGUCUCGuCGGCgCgCAGCCU--GCa -3'
miRNA:   3'- aGGCGGAGCuGUCG-GaGUCGGAguCG- -5'
18534 5' -59.2 NC_004681.1 + 17688 0.67 0.547114
Target:  5'- gCCGCCgauaCcACGGCgCUUGGCCgCGGCg -3'
miRNA:   3'- aGGCGGa---GcUGUCG-GAGUCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 72095 0.67 0.536875
Target:  5'- -aUGCCUCGauuGCAGUCUucaugucaCAGCC-CAGCc -3'
miRNA:   3'- agGCGGAGC---UGUCGGA--------GUCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 8331 0.67 0.536875
Target:  5'- -gCGCCUCGACcucGGCCUggugGGCCUUgaAGUc -3'
miRNA:   3'- agGCGGAGCUG---UCGGAg---UCGGAG--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.