miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18536 5' -59.1 NC_004681.1 + 36136 0.66 0.620968
Target:  5'- cGCCGCCAcuucuCGUcuucGGUUUCgGCGCACa -3'
miRNA:   3'- -CGGUGGUcu---GCA----CCGGAGaCGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 44817 0.66 0.610489
Target:  5'- cGCCGCaGGugGUGGUgaCgcgcuugGUGCGCGu -3'
miRNA:   3'- -CGGUGgUCugCACCGgaGa------CGCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 9609 0.66 0.58959
Target:  5'- aCCAgCAGGCcgaGGCgCUCUucggcGCGCACGg -3'
miRNA:   3'- cGGUgGUCUGca-CCG-GAGA-----CGCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 14475 0.66 0.58959
Target:  5'- cGCCGCCuccgccgagcaGGGCGcgcuggUGGCCggugCUG-GCGCGa -3'
miRNA:   3'- -CGGUGG-----------UCUGC------ACCGGa---GACgCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 66570 0.66 0.578147
Target:  5'- gGCCuuguucaGCCAGGCGaUGaGCUUCUGCacgcCGCGg -3'
miRNA:   3'- -CGG-------UGGUCUGC-AC-CGGAGACGc---GUGC- -5'
18536 5' -59.1 NC_004681.1 + 26453 0.67 0.558502
Target:  5'- cGCCGCCAGAguaCGgcuacGGCCUggcCUG-GUACGa -3'
miRNA:   3'- -CGGUGGUCU---GCa----CCGGA---GACgCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 5778 0.67 0.518832
Target:  5'- cGCCACCGcGGCGauguggaagaacgcUGGCCgccccaaccugguaCUGCgGCACGa -3'
miRNA:   3'- -CGGUGGU-CUGC--------------ACCGGa-------------GACG-CGUGC- -5'
18536 5' -59.1 NC_004681.1 + 16114 0.67 0.517828
Target:  5'- aGCCGCCAcGGCuGUgucggguaucGGCUUCgcgGCGCugGc -3'
miRNA:   3'- -CGGUGGU-CUG-CA----------CCGGAGa--CGCGugC- -5'
18536 5' -59.1 NC_004681.1 + 60959 0.67 0.516826
Target:  5'- aGCCACCgcauaaGGGCGagUGGCUUgacggugCUGUGCGCa -3'
miRNA:   3'- -CGGUGG------UCUGC--ACCGGA-------GACGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 60309 0.68 0.507839
Target:  5'- cGCCACUAGGCGUGauCC-CcGCGCGgCGg -3'
miRNA:   3'- -CGGUGGUCUGCACc-GGaGaCGCGU-GC- -5'
18536 5' -59.1 NC_004681.1 + 13676 0.68 0.497932
Target:  5'- gGCCGCC---CGcGGCCUUgaaGCGCGCGu -3'
miRNA:   3'- -CGGUGGucuGCaCCGGAGa--CGCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 16209 0.68 0.488112
Target:  5'- cCCGacaCAGcCGUGGCggCUGUGCGCGc -3'
miRNA:   3'- cGGUg--GUCuGCACCGgaGACGCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 8997 0.68 0.488112
Target:  5'- cGCCGCCAGccaggaGC-UGGaCCUCuuccuUGCGCugGa -3'
miRNA:   3'- -CGGUGGUC------UGcACC-GGAG-----ACGCGugC- -5'
18536 5' -59.1 NC_004681.1 + 16312 0.69 0.449797
Target:  5'- uCCGCCgaAGGCGUGGCCguUCUGC-UugGc -3'
miRNA:   3'- cGGUGG--UCUGCACCGG--AGACGcGugC- -5'
18536 5' -59.1 NC_004681.1 + 37846 0.69 0.449797
Target:  5'- uGCCAUCcaucaGGAgGUGGUgaagCUGCGCACa -3'
miRNA:   3'- -CGGUGG-----UCUgCACCGga--GACGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 57375 0.69 0.440478
Target:  5'- gGCUACCAGGuuUGGCCUCuUGCGacccugcuuCACGc -3'
miRNA:   3'- -CGGUGGUCUgcACCGGAG-ACGC---------GUGC- -5'
18536 5' -59.1 NC_004681.1 + 41070 0.69 0.43127
Target:  5'- cGCCGCCGccGAUGUGcucaccgaacGCCUCaGCGUugGu -3'
miRNA:   3'- -CGGUGGU--CUGCAC----------CGGAGaCGCGugC- -5'
18536 5' -59.1 NC_004681.1 + 52952 0.69 0.422175
Target:  5'- cGUCACC-GACGUGGCCUg-GCagGCugGc -3'
miRNA:   3'- -CGGUGGuCUGCACCGGAgaCG--CGugC- -5'
18536 5' -59.1 NC_004681.1 + 40391 0.69 0.407867
Target:  5'- aCCGCCAG-CGUGGCCggugucUCcacccagaguuugaaUGCGCGCu -3'
miRNA:   3'- cGGUGGUCuGCACCGG------AG---------------ACGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 5444 0.69 0.404338
Target:  5'- uUCACCgggAGGCGUGccagcGCCUgUGCGCGCu -3'
miRNA:   3'- cGGUGG---UCUGCAC-----CGGAgACGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.