miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18537 5' -55.9 NC_004681.1 + 14662 0.66 0.787767
Target:  5'- -aGGCgACUGCggCCGUggUGGCGGugGCg -3'
miRNA:   3'- gaCUGgUGAUG--GGCGa-GUCGUCugCG- -5'
18537 5' -55.9 NC_004681.1 + 74895 0.66 0.787767
Target:  5'- -cGGCCGCUggcuACaCCGUgaccaaAGCAGACGa -3'
miRNA:   3'- gaCUGGUGA----UG-GGCGag----UCGUCUGCg -5'
18537 5' -55.9 NC_004681.1 + 17304 0.66 0.787767
Target:  5'- gCUGGCgCGCgUGCCCGCg----GGACGCu -3'
miRNA:   3'- -GACUG-GUG-AUGGGCGagucgUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 65297 0.66 0.778092
Target:  5'- cCUGACC-CUcccACCagGCgucCAGguGGCGCu -3'
miRNA:   3'- -GACUGGuGA---UGGg-CGa--GUCguCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 16692 0.66 0.778092
Target:  5'- -cGAgCACcgGCCUGUUCccggguaugacgGGCGGugGCa -3'
miRNA:   3'- gaCUgGUGa-UGGGCGAG------------UCGUCugCG- -5'
18537 5' -55.9 NC_004681.1 + 52863 0.66 0.778092
Target:  5'- gCUGGCCAucggcCUGCCCGCgugcccgagccCGGC-GACGa -3'
miRNA:   3'- -GACUGGU-----GAUGGGCGa----------GUCGuCUGCg -5'
18537 5' -55.9 NC_004681.1 + 10135 0.66 0.768273
Target:  5'- gCUGACCaACUACUgGUUCAaGCGcGACa- -3'
miRNA:   3'- -GACUGG-UGAUGGgCGAGU-CGU-CUGcg -5'
18537 5' -55.9 NC_004681.1 + 16341 0.66 0.768273
Target:  5'- -aGGCCAUc-UCCGCUgCGGCGGugGg -3'
miRNA:   3'- gaCUGGUGauGGGCGA-GUCGUCugCg -5'
18537 5' -55.9 NC_004681.1 + 48498 0.66 0.768273
Target:  5'- aCUcGCCGCggagaACCCGgagCGGguGGCGCa -3'
miRNA:   3'- -GAcUGGUGa----UGGGCga-GUCguCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 49678 0.66 0.75832
Target:  5'- -aGGCUACUGCgCGCUCuGCGGcCu- -3'
miRNA:   3'- gaCUGGUGAUGgGCGAGuCGUCuGcg -5'
18537 5' -55.9 NC_004681.1 + 47365 0.66 0.75832
Target:  5'- -cGACUACUuagucGCCCGCcaacgcgccaCGGC-GACGCg -3'
miRNA:   3'- gaCUGGUGA-----UGGGCGa---------GUCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 25492 0.66 0.75832
Target:  5'- -gGACUGggUUGgUCGCUCAGCggGGACGCc -3'
miRNA:   3'- gaCUGGU--GAUgGGCGAGUCG--UCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 19749 0.66 0.748245
Target:  5'- gCUGAUCGC--CCCGCUguggggugagaAGUGGACGCu -3'
miRNA:   3'- -GACUGGUGauGGGCGAg----------UCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 38920 0.66 0.748245
Target:  5'- gCUG-CCGCcguagGCCCGgaugguCUCGGCGGACuuGCg -3'
miRNA:   3'- -GACuGGUGa----UGGGC------GAGUCGUCUG--CG- -5'
18537 5' -55.9 NC_004681.1 + 60309 0.66 0.748245
Target:  5'- --cGCCACUAggcgugaucCCCGCgCGGCGGGUGCc -3'
miRNA:   3'- gacUGGUGAU---------GGGCGaGUCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 35896 0.66 0.738057
Target:  5'- cCUGGCCGCgcCCCGCaauggAGuCGGACGa -3'
miRNA:   3'- -GACUGGUGauGGGCGag---UC-GUCUGCg -5'
18537 5' -55.9 NC_004681.1 + 38055 0.66 0.738057
Target:  5'- -cGGCCucgggGCUgACUCGCUC-GCuGACGCu -3'
miRNA:   3'- gaCUGG-----UGA-UGGGCGAGuCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 61860 0.67 0.727768
Target:  5'- cCUGGCCGauggcgGCCgCGgUCuGguGGCGCg -3'
miRNA:   3'- -GACUGGUga----UGG-GCgAGuCguCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 23671 0.67 0.727768
Target:  5'- gCUGGCCucCUacgcGCCCGcCUCcGCGGACa- -3'
miRNA:   3'- -GACUGGu-GA----UGGGC-GAGuCGUCUGcg -5'
18537 5' -55.9 NC_004681.1 + 33093 0.67 0.717388
Target:  5'- -aGGCCGCUACCgGggUAGCuGACa- -3'
miRNA:   3'- gaCUGGUGAUGGgCgaGUCGuCUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.