miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18554 3' -53 NC_004682.1 + 9409 0.66 0.855617
Target:  5'- aCGgcaCgACGGAGaucaccCCGGAGCUUCGCu -3'
miRNA:   3'- cGCa--GgUGCUUCaa----GGCUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 25628 0.66 0.854772
Target:  5'- -gGUCCcguCGAAGUagcgcugUCCGGGcGCUCCa- -3'
miRNA:   3'- cgCAGGu--GCUUCA-------AGGCUU-CGAGGcg -5'
18554 3' -53 NC_004682.1 + 7499 0.66 0.84706
Target:  5'- aGUGgccCCGCGAgagGGUcgCggaGAAGUUCCGCg -3'
miRNA:   3'- -CGCa--GGUGCU---UCAa-Gg--CUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 22240 0.66 0.84706
Target:  5'- --cUCUACGggGggaggCCGGAucGCUCCGg -3'
miRNA:   3'- cgcAGGUGCuuCaa---GGCUU--CGAGGCg -5'
18554 3' -53 NC_004682.1 + 49338 0.66 0.84706
Target:  5'- -gGUCUucgGCGAAG-UCUGAAGCUCgaaGUa -3'
miRNA:   3'- cgCAGG---UGCUUCaAGGCUUCGAGg--CG- -5'
18554 3' -53 NC_004682.1 + 10870 0.66 0.84706
Target:  5'- uCGUUCGCcGGGUUCCGGuucguccgugcGGCUUaCGCg -3'
miRNA:   3'- cGCAGGUGcUUCAAGGCU-----------UCGAG-GCG- -5'
18554 3' -53 NC_004682.1 + 26270 0.66 0.838273
Target:  5'- cGCGUUCGCGggGa--CGuuGUUgCCGCc -3'
miRNA:   3'- -CGCAGGUGCuuCaagGCuuCGA-GGCG- -5'
18554 3' -53 NC_004682.1 + 33246 0.66 0.838273
Target:  5'- cGUGUCCGCGAgcguGGUgaacgCUGGcgugAGCgCCGUg -3'
miRNA:   3'- -CGCAGGUGCU----UCAa----GGCU----UCGaGGCG- -5'
18554 3' -53 NC_004682.1 + 18958 0.66 0.838273
Target:  5'- gGCG-CCAagGAGGggCUGAAGUUCgGUg -3'
miRNA:   3'- -CGCaGGUg-CUUCaaGGCUUCGAGgCG- -5'
18554 3' -53 NC_004682.1 + 43458 0.66 0.829266
Target:  5'- uGCGUCgaaguGCGAgaaggcuacGGggCCGcaGAGUUCCGCg -3'
miRNA:   3'- -CGCAGg----UGCU---------UCaaGGC--UUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 5138 0.66 0.829266
Target:  5'- cGCGUgCUGCGGGcaucUCCGAGGCcaaggcCCGCg -3'
miRNA:   3'- -CGCA-GGUGCUUca--AGGCUUCGa-----GGCG- -5'
18554 3' -53 NC_004682.1 + 15286 0.66 0.810627
Target:  5'- uCGuUCCGCGAAGaggCCGAccgcgAGUUCgCGCc -3'
miRNA:   3'- cGC-AGGUGCUUCaa-GGCU-----UCGAG-GCG- -5'
18554 3' -53 NC_004682.1 + 3393 0.67 0.801016
Target:  5'- uCGUaCACGccGacaCCGAGGCUCCGUu -3'
miRNA:   3'- cGCAgGUGCuuCaa-GGCUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 41211 0.67 0.791225
Target:  5'- cGCGgaUCUGCauGGUgucUCCGAugaacucaAGCUCCGCg -3'
miRNA:   3'- -CGC--AGGUGcuUCA---AGGCU--------UCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 42244 0.67 0.785268
Target:  5'- aGCGUCuuCAUGAucacGGggCCGggGUagccagcgcggugcaUCCGCa -3'
miRNA:   3'- -CGCAG--GUGCU----UCaaGGCuuCG---------------AGGCG- -5'
18554 3' -53 NC_004682.1 + 10364 0.67 0.781264
Target:  5'- uCGUCCuCGAugacgGGUUCCGAgucgGGgUCuCGCa -3'
miRNA:   3'- cGCAGGuGCU-----UCAAGGCU----UCgAG-GCG- -5'
18554 3' -53 NC_004682.1 + 40002 0.67 0.781264
Target:  5'- aGCGUCUgcGCGAGG--CCGAGGCccUCgGUg -3'
miRNA:   3'- -CGCAGG--UGCUUCaaGGCUUCG--AGgCG- -5'
18554 3' -53 NC_004682.1 + 22831 0.67 0.771147
Target:  5'- aGCGgcCCGgaaGAAGgucCCGGAGC-CCGCg -3'
miRNA:   3'- -CGCa-GGUg--CUUCaa-GGCUUCGaGGCG- -5'
18554 3' -53 NC_004682.1 + 5905 0.67 0.771147
Target:  5'- gGCGUCCAccCGAAGUcgUgGgcGUUCCaGCa -3'
miRNA:   3'- -CGCAGGU--GCUUCAa-GgCuuCGAGG-CG- -5'
18554 3' -53 NC_004682.1 + 29913 0.67 0.771147
Target:  5'- cGCGccgaUCCgGCGcAGUUCCuGGAuaccugcuGCUCCGCg -3'
miRNA:   3'- -CGC----AGG-UGCuUCAAGG-CUU--------CGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.