miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18555 5' -51.2 NC_004682.1 + 1995 0.66 0.907955
Target:  5'- aCACGGCGGUUggccccCCGAG-GCCgaCGGCg -3'
miRNA:   3'- gGUGUCGUCAA------GGUUCuUGGa-GUCGg -5'
18555 5' -51.2 NC_004682.1 + 31128 0.66 0.907955
Target:  5'- uCCuCGGUGGagCCAggcAGAauccACUUCAGCCa -3'
miRNA:   3'- -GGuGUCGUCaaGGU---UCU----UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 50490 0.66 0.901019
Target:  5'- gCCGCuugggGGCGGcUCCucgGAGGGCCg-AGCCa -3'
miRNA:   3'- -GGUG-----UCGUCaAGG---UUCUUGGagUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20313 0.66 0.901019
Target:  5'- cCCGgAGCGGaaguacgCCAAGAcggugaACUUCGGCa -3'
miRNA:   3'- -GGUgUCGUCaa-----GGUUCU------UGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 9627 0.66 0.901018
Target:  5'- gCC-CAGCAGUUCagcgcugcGGAGCUUCGGa- -3'
miRNA:   3'- -GGuGUCGUCAAGgu------UCUUGGAGUCgg -5'
18555 5' -51.2 NC_004682.1 + 29660 0.66 0.901018
Target:  5'- gCCAcCAGguGgUCgAGGAucuCCUgAGCCu -3'
miRNA:   3'- -GGU-GUCguCaAGgUUCUu--GGAgUCGG- -5'
18555 5' -51.2 NC_004682.1 + 45781 0.66 0.89453
Target:  5'- gCGUAGCGGUccaugaucagUCCuccuccuugaugccuAGAGCCUCAGCg -3'
miRNA:   3'- gGUGUCGUCA----------AGGu--------------UCUUGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 36647 0.66 0.893795
Target:  5'- -uGCGGUAGUcgauguccucgaUCCAGGAGCCcaccuucacgUCAGgCa -3'
miRNA:   3'- ggUGUCGUCA------------AGGUUCUUGG----------AGUCgG- -5'
18555 5' -51.2 NC_004682.1 + 11004 0.66 0.893795
Target:  5'- uUCGCGGCuGg--CAAGAGCg-CAGCCg -3'
miRNA:   3'- -GGUGUCGuCaagGUUCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 34594 0.66 0.893794
Target:  5'- uCCGCA-CAGcgCCAGGAACgaC-GCCa -3'
miRNA:   3'- -GGUGUcGUCaaGGUUCUUGgaGuCGG- -5'
18555 5' -51.2 NC_004682.1 + 20126 0.66 0.893056
Target:  5'- gCCACAGCcGUugaUCCAAGcggucucgucgcuGACCgaCAGCg -3'
miRNA:   3'- -GGUGUCGuCA---AGGUUC-------------UUGGa-GUCGg -5'
18555 5' -51.2 NC_004682.1 + 21272 0.66 0.886288
Target:  5'- aCgACAGCAGaucgUUCGAGAccaaCUCGGCg -3'
miRNA:   3'- -GgUGUCGUCa---AGGUUCUug--GAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 23130 0.66 0.886288
Target:  5'- aCCGuCAGguGaguugcggCCAGGAGCCaCAGCg -3'
miRNA:   3'- -GGU-GUCguCaa------GGUUCUUGGaGUCGg -5'
18555 5' -51.2 NC_004682.1 + 41337 0.66 0.886287
Target:  5'- cCCGguGCAGcgUCAGGAucAUCUCGGgCa -3'
miRNA:   3'- -GGUguCGUCaaGGUUCU--UGGAGUCgG- -5'
18555 5' -51.2 NC_004682.1 + 4067 0.66 0.878503
Target:  5'- -aGCAGCGGUcUCCAA-AGCCgcCGGCUg -3'
miRNA:   3'- ggUGUCGUCA-AGGUUcUUGGa-GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 38625 0.66 0.878503
Target:  5'- -uGCAGCGGUagcggaUCGAGAcgacaGCC-CAGCCg -3'
miRNA:   3'- ggUGUCGUCAa-----GGUUCU-----UGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 23431 0.66 0.878503
Target:  5'- ---uGGCGGggCCuGGAACUaCGGCCa -3'
miRNA:   3'- ggugUCGUCaaGGuUCUUGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 43601 0.66 0.878503
Target:  5'- aCCACAGCGugaaccgagccuGUUCCA---GCgUCGGCa -3'
miRNA:   3'- -GGUGUCGU------------CAAGGUucuUGgAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 22033 0.66 0.878503
Target:  5'- aUCGCAGCAGgaCUGAucGCCcuguccgcucUCGGCCu -3'
miRNA:   3'- -GGUGUCGUCaaGGUUcuUGG----------AGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 42218 0.66 0.870447
Target:  5'- gCAUgAGCugAGUUCCccuGAGCUUCAGCg -3'
miRNA:   3'- gGUG-UCG--UCAAGGuu-CUUGGAGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.