miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18555 5' -51.2 NC_004682.1 + 12513 0.68 0.797228
Target:  5'- aCACGGUGG--CCAAGAGCCU--GCCc -3'
miRNA:   3'- gGUGUCGUCaaGGUUCUUGGAguCGG- -5'
18555 5' -51.2 NC_004682.1 + 39580 0.68 0.807142
Target:  5'- uCUGCGGCucGUauUCCuucacGACCUCAGCCc -3'
miRNA:   3'- -GGUGUCGu-CA--AGGuuc--UUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 12394 0.66 0.870447
Target:  5'- cCCgACGGUGGgcgugCCAGGAGCacaggcguggCAGCCg -3'
miRNA:   3'- -GG-UGUCGUCaa---GGUUCUUGga--------GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 36647 0.66 0.893795
Target:  5'- -uGCGGUAGUcgauguccucgaUCCAGGAGCCcaccuucacgUCAGgCa -3'
miRNA:   3'- ggUGUCGUCA------------AGGUUCUUGG----------AGUCgG- -5'
18555 5' -51.2 NC_004682.1 + 11135 0.72 0.599251
Target:  5'- cCCGCAGCGGUaccugCUggGGGCCggaugacgCuGCCg -3'
miRNA:   3'- -GGUGUCGUCAa----GGuuCUUGGa-------GuCGG- -5'
18555 5' -51.2 NC_004682.1 + 17466 0.69 0.729936
Target:  5'- cCCACGGCgagaugaAGUUCCGcucuGGggUCUCcaagaagaccggcaAGCCg -3'
miRNA:   3'- -GGUGUCG-------UCAAGGU----UCuuGGAG--------------UCGG- -5'
18555 5' -51.2 NC_004682.1 + 27102 0.67 0.835662
Target:  5'- aCC-CAGcCAGgaucUCCAGcaccugauGGACCUCGGUCg -3'
miRNA:   3'- -GGuGUC-GUCa---AGGUU--------CUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20313 0.66 0.901019
Target:  5'- cCCGgAGCGGaaguacgCCAAGAcggugaACUUCGGCa -3'
miRNA:   3'- -GGUgUCGUCaa-----GGUUCU------UGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 3526 0.69 0.745137
Target:  5'- aCGCGGCAGcggcuggCCAAGGACCcgcUAGUCc -3'
miRNA:   3'- gGUGUCGUCaa-----GGUUCUUGGa--GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 50490 0.66 0.901019
Target:  5'- gCCGCuugggGGCGGcUCCucgGAGGGCCg-AGCCa -3'
miRNA:   3'- -GGUG-----UCGUCaAGG---UUCUUGGagUCGG- -5'
18555 5' -51.2 NC_004682.1 + 23731 0.67 0.82637
Target:  5'- gCCACGGUcucaccguuugAGcggCCA--GACCUCGGCCc -3'
miRNA:   3'- -GGUGUCG-----------UCaa-GGUucUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 12912 0.69 0.75585
Target:  5'- uUCACGGCccgAGgaaCAAGAACUaCGGCCa -3'
miRNA:   3'- -GGUGUCG---UCaagGUUCUUGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 43485 0.67 0.844725
Target:  5'- gCCGCAG-AGUUCCGcgagcgAGAGCg-CGGCUg -3'
miRNA:   3'- -GGUGUCgUCAAGGU------UCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20126 0.66 0.869627
Target:  5'- -uGCGGCGGUgcuuccuggCCGAcGAgggccaauugaugGCCUCAGUCg -3'
miRNA:   3'- ggUGUCGUCAa--------GGUU-CU-------------UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 43601 0.66 0.878503
Target:  5'- aCCACAGCGugaaccgagccuGUUCCA---GCgUCGGCa -3'
miRNA:   3'- -GGUGUCGU------------CAAGGUucuUGgAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 11004 0.66 0.893795
Target:  5'- uUCGCGGCuGg--CAAGAGCg-CAGCCg -3'
miRNA:   3'- -GGUGUCGuCaagGUUCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 46750 0.76 0.352903
Target:  5'- aCACGGCAGga-CucGAACCUgCAGCCg -3'
miRNA:   3'- gGUGUCGUCaagGuuCUUGGA-GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20915 0.73 0.499538
Target:  5'- -aGCAGCAGgcuaUCCAGGAACUgc-GCCg -3'
miRNA:   3'- ggUGUCGUCa---AGGUUCUUGGaguCGG- -5'
18555 5' -51.2 NC_004682.1 + 32888 0.7 0.667426
Target:  5'- -aGCGGCAGgaucgCCGGcaucauucgugcGAacGCCUCAGCCa -3'
miRNA:   3'- ggUGUCGUCaa---GGUU------------CU--UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 42344 0.69 0.723356
Target:  5'- aUCACcGCG--UCCAGGAACCgcucgCAGUCg -3'
miRNA:   3'- -GGUGuCGUcaAGGUUCUUGGa----GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.