miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18574 5' -55.4 NC_004682.1 + 29089 0.66 0.709793
Target:  5'- cUGCCGGGagaugUCGGCgGGGucggcuuCGAGCUu -3'
miRNA:   3'- aAUGGCCUg----AGCUGgUCCuu-----GCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 12570 0.66 0.709793
Target:  5'- -aGCU-GAC-CGACCAGGucGCGGGCa -3'
miRNA:   3'- aaUGGcCUGaGCUGGUCCu-UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 50707 0.66 0.698967
Target:  5'- gUGCCGGcC-CGuGCCGGcGGuCGAGCCc -3'
miRNA:   3'- aAUGGCCuGaGC-UGGUC-CUuGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 22073 0.66 0.698967
Target:  5'- --cCCGGACacCGugUucguGGAGCGGGUCu -3'
miRNA:   3'- aauGGCCUGa-GCugGu---CCUUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 996 0.66 0.688075
Target:  5'- -aACCGcAUUCGugCGGGGaccacgugACGAGCg -3'
miRNA:   3'- aaUGGCcUGAGCugGUCCU--------UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 43488 0.66 0.688075
Target:  5'- -aGCUGGAagUCGucACCGGGggUGuuGCCg -3'
miRNA:   3'- aaUGGCCUg-AGC--UGGUCCuuGCu-CGG- -5'
18574 5' -55.4 NC_004682.1 + 32928 0.66 0.688075
Target:  5'- gUGCCGGgacgcuccaGCUCGGUCAGGAcCGA-CCg -3'
miRNA:   3'- aAUGGCC---------UGAGCUGGUCCUuGCUcGG- -5'
18574 5' -55.4 NC_004682.1 + 38778 0.66 0.684797
Target:  5'- -gGuuGGugUCGGCCAGcGAcACGAccuuggucgucucgGCCa -3'
miRNA:   3'- aaUggCCugAGCUGGUC-CU-UGCU--------------CGG- -5'
18574 5' -55.4 NC_004682.1 + 46605 0.66 0.67713
Target:  5'- -aGCgGGACgcacguucUCGACCAGGcgcagcaucuGCGGGCg -3'
miRNA:   3'- aaUGgCCUG--------AGCUGGUCCu---------UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 37466 0.66 0.666141
Target:  5'- --cCCGGACcUGAuCCAGGAACugcuuGCCc -3'
miRNA:   3'- aauGGCCUGaGCU-GGUCCUUGcu---CGG- -5'
18574 5' -55.4 NC_004682.1 + 21667 0.66 0.666141
Target:  5'- -cGCU-GACUaCGACCGGGAuucgcGCGAGUg -3'
miRNA:   3'- aaUGGcCUGA-GCUGGUCCU-----UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 418 0.66 0.65512
Target:  5'- --uUCGGGCUUGACagagaaCGGGAAUGGGUg -3'
miRNA:   3'- aauGGCCUGAGCUG------GUCCUUGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 25062 0.66 0.654017
Target:  5'- -aGCCGGACcccgaggucCGAcuguucacaCCAGGGgagauccccgaagGCGAGCCg -3'
miRNA:   3'- aaUGGCCUGa--------GCU---------GGUCCU-------------UGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 43449 0.67 0.644078
Target:  5'- aUGCCguaGGuCUCGGCCAGGGcaACGcuguagacGCCa -3'
miRNA:   3'- aAUGG---CCuGAGCUGGUCCU--UGCu-------CGG- -5'
18574 5' -55.4 NC_004682.1 + 34928 0.67 0.644078
Target:  5'- -gGCuCGGcUUCGACUuGGAAUGuGCCg -3'
miRNA:   3'- aaUG-GCCuGAGCUGGuCCUUGCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 32502 0.67 0.644078
Target:  5'- --cCCaGcCUCGGCCcGaGAACGGGCCu -3'
miRNA:   3'- aauGGcCuGAGCUGGuC-CUUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 48200 0.67 0.633024
Target:  5'- --uCUGGucccauguCUCGACCAGGAcGCcGGCCu -3'
miRNA:   3'- aauGGCCu-------GAGCUGGUCCU-UGcUCGG- -5'
18574 5' -55.4 NC_004682.1 + 10601 0.67 0.633024
Target:  5'- -cACUGGGCaUUGACCAGGccguguuCGucGGCCa -3'
miRNA:   3'- aaUGGCCUG-AGCUGGUCCuu-----GC--UCGG- -5'
18574 5' -55.4 NC_004682.1 + 42473 0.67 0.62197
Target:  5'- -gGCCGGGgUCGGCCucccuGCG-GCCa -3'
miRNA:   3'- aaUGGCCUgAGCUGGuccu-UGCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 9893 0.67 0.62197
Target:  5'- cUACCGGAUggagUCGAUCuGGcGCGAuCCg -3'
miRNA:   3'- aAUGGCCUG----AGCUGGuCCuUGCUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.