miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18644 3' -53.6 NC_004682.1 + 3519 0.66 0.813962
Target:  5'- cGAGGagACGCGGCAGCGG-CUGGCcaaGGa -3'
miRNA:   3'- -CUCUggUGUGUUGUCGUCuGGCUG---CC- -5'
18644 3' -53.6 NC_004682.1 + 16904 0.66 0.813962
Target:  5'- cAGGCUAcCGCcaaAGCAGU-GGCCGAUGGa -3'
miRNA:   3'- cUCUGGU-GUG---UUGUCGuCUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 46017 0.66 0.813962
Target:  5'- -uGACCACGCcgUAGCccgcguuGAUCGACcGGa -3'
miRNA:   3'- cuCUGGUGUGuuGUCGu------CUGGCUG-CC- -5'
18644 3' -53.6 NC_004682.1 + 30035 0.66 0.813962
Target:  5'- aAGACCACGuCGAggUAGCAGucGCCGuucuccucGCGGa -3'
miRNA:   3'- cUCUGGUGU-GUU--GUCGUC--UGGC--------UGCC- -5'
18644 3' -53.6 NC_004682.1 + 23636 0.66 0.813962
Target:  5'- aAGAUCAU-CGACAcccuGACCGACGGg -3'
miRNA:   3'- cUCUGGUGuGUUGUcgu-CUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 4621 0.66 0.80439
Target:  5'- gGAGGCCACGCucGCuGCcgAGAUCGA-GGc -3'
miRNA:   3'- -CUCUGGUGUGu-UGuCG--UCUGGCUgCC- -5'
18644 3' -53.6 NC_004682.1 + 7912 0.66 0.794632
Target:  5'- aAGACCGuccuCGACuucaucGGgGGGCCGGCGGg -3'
miRNA:   3'- cUCUGGUgu--GUUG------UCgUCUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 40308 0.66 0.784701
Target:  5'- -uGACCGaACGGCAGCGaguccguccGACCGugGu -3'
miRNA:   3'- cuCUGGUgUGUUGUCGU---------CUGGCugCc -5'
18644 3' -53.6 NC_004682.1 + 27107 0.66 0.784701
Target:  5'- -uGGCCGCucaAACGGUgAGACCGugGc -3'
miRNA:   3'- cuCUGGUGug-UUGUCG-UCUGGCugCc -5'
18644 3' -53.6 NC_004682.1 + 18410 0.66 0.784701
Target:  5'- aAGAgCACGCAggGCAGCAucGuCCaGACGGc -3'
miRNA:   3'- cUCUgGUGUGU--UGUCGU--CuGG-CUGCC- -5'
18644 3' -53.6 NC_004682.1 + 48993 0.66 0.784701
Target:  5'- uGGGGCCGgGgAGCccgAGCAGACgcccgGACGGg -3'
miRNA:   3'- -CUCUGGUgUgUUG---UCGUCUGg----CUGCC- -5'
18644 3' -53.6 NC_004682.1 + 12937 0.66 0.784701
Target:  5'- aGAGACCGCGCuGAUcaacguccguuuGGCuGAugUCGGCGGa -3'
miRNA:   3'- -CUCUGGUGUG-UUG------------UCGuCU--GGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 7106 0.66 0.784701
Target:  5'- cGGGCCGCuACGACGGCGcGAgCGAUc- -3'
miRNA:   3'- cUCUGGUG-UGUUGUCGU-CUgGCUGcc -5'
18644 3' -53.6 NC_004682.1 + 47623 0.66 0.784701
Target:  5'- gGAGACCuuGCcuuCAGcCAGGCCGaucaucacguuGCGGg -3'
miRNA:   3'- -CUCUGGugUGuu-GUC-GUCUGGC-----------UGCC- -5'
18644 3' -53.6 NC_004682.1 + 16345 0.66 0.783698
Target:  5'- uGGGGCCGCGCccucaacGACGGUcGACUGGCc- -3'
miRNA:   3'- -CUCUGGUGUG-------UUGUCGuCUGGCUGcc -5'
18644 3' -53.6 NC_004682.1 + 2594 0.66 0.774606
Target:  5'- aGGGGCCACAgGGucCAGCAGGCgucccguccuCGaACGGc -3'
miRNA:   3'- -CUCUGGUGUgUU--GUCGUCUG----------GC-UGCC- -5'
18644 3' -53.6 NC_004682.1 + 13091 0.66 0.774606
Target:  5'- aGGGCUAC-CuguCGG-AGACCGACGGc -3'
miRNA:   3'- cUCUGGUGuGuu-GUCgUCUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 15032 0.67 0.753977
Target:  5'- gGAGACCugGCcggaaacgguGCGGCGcguGGUCGACGGg -3'
miRNA:   3'- -CUCUGGugUGu---------UGUCGU---CUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 10756 0.67 0.753977
Target:  5'- cGGGCCACACAGCGccucuCGGGCgCGGUGGu -3'
miRNA:   3'- cUCUGGUGUGUUGUc----GUCUG-GCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 6139 0.67 0.753977
Target:  5'- --cGCCAaggcgUACGACGGCGGGCCGcuGCGa -3'
miRNA:   3'- cucUGGU-----GUGUUGUCGUCUGGC--UGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.