miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18683 5' -62.5 NC_004682.1 + 17452 0.66 0.37666
Target:  5'- -cAGGuuGGUGACGCcgucgaGGGUcugcgagaGGCCCu -3'
miRNA:   3'- ccUCCggCCACUGCG------UCCGca------CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 38633 0.66 0.37666
Target:  5'- -cAGGCCGGUGAC-C-GGCcacGGCUCu -3'
miRNA:   3'- ccUCCGGCCACUGcGuCCGca-CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 2013 0.66 0.368334
Target:  5'- cGAGGCCGacGGCGCacccguccaGGGUGUcgagGGUCCa -3'
miRNA:   3'- cCUCCGGCcaCUGCG---------UCCGCA----CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 42981 0.66 0.360135
Target:  5'- gGGGGGCCGGcgGGC-CAuGaGCaGUGGCgCa -3'
miRNA:   3'- -CCUCCGGCCa-CUGcGU-C-CG-CACCGgG- -5'
18683 5' -62.5 NC_004682.1 + 2138 0.66 0.352065
Target:  5'- -cGGGCCGGUcgGACccuGCGGaccagucaguccGCGUGGaCCCu -3'
miRNA:   3'- ccUCCGGCCA--CUG---CGUC------------CGCACC-GGG- -5'
18683 5' -62.5 NC_004682.1 + 23397 0.66 0.344123
Target:  5'- -aAGGCUGGcucggcacUGGCGCAuucgagguagguGGCGgGGCCUg -3'
miRNA:   3'- ccUCCGGCC--------ACUGCGU------------CCGCaCCGGG- -5'
18683 5' -62.5 NC_004682.1 + 2678 0.66 0.336311
Target:  5'- cGAGGaCGG-GACGCcuGCuggacccuGUGGCCCc -3'
miRNA:   3'- cCUCCgGCCaCUGCGucCG--------CACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 7511 0.67 0.32863
Target:  5'- cGGcGGCgaUGGUGAuccaCGCGgcguGGCGUGGCUUg -3'
miRNA:   3'- -CCuCCG--GCCACU----GCGU----CCGCACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 35883 0.67 0.321079
Target:  5'- aGGAgaccuGGCCGGaaacGGUGCGGcGCGUGGUCg -3'
miRNA:   3'- -CCU-----CCGGCCa---CUGCGUC-CGCACCGGg -5'
18683 5' -62.5 NC_004682.1 + 25242 0.67 0.321079
Target:  5'- cGGAGaCCGGcaagGuagcccacCGCGucaaggcccacGGCGUGGCCCa -3'
miRNA:   3'- -CCUCcGGCCa---Cu-------GCGU-----------CCGCACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 39425 0.67 0.318838
Target:  5'- aGGAGGCCGGUGcuacggcugccgccGCGCcaacggcaaGCGgaagcGGCUCa -3'
miRNA:   3'- -CCUCCGGCCAC--------------UGCGuc-------CGCa----CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 6085 0.67 0.313658
Target:  5'- cGGcGGGCUGGUGAgcCGUuGGCaGaagacgaugcUGGCCCg -3'
miRNA:   3'- -CC-UCCGGCCACU--GCGuCCG-C----------ACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 28238 0.67 0.313658
Target:  5'- aGGGGGCUcgGGUGAUGUAGaGgGUcGCuCCg -3'
miRNA:   3'- -CCUCCGG--CCACUGCGUC-CgCAcCG-GG- -5'
18683 5' -62.5 NC_004682.1 + 48649 0.67 0.313658
Target:  5'- -aAGGuCUGGUcGACGUAGGCGaUGuugauGCCCu -3'
miRNA:   3'- ccUCC-GGCCA-CUGCGUCCGC-AC-----CGGG- -5'
18683 5' -62.5 NC_004682.1 + 44164 0.67 0.299208
Target:  5'- cGGGGGUCGGagacGACGaCGGGauCGUGGgUCg -3'
miRNA:   3'- -CCUCCGGCCa---CUGC-GUCC--GCACCgGG- -5'
18683 5' -62.5 NC_004682.1 + 2309 0.67 0.292179
Target:  5'- -cGGGCCGGUGGgaccUGCuGGGCcGgugGGUCCg -3'
miRNA:   3'- ccUCCGGCCACU----GCG-UCCG-Ca--CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 1637 0.67 0.292179
Target:  5'- uGAGGCaucuGGUGGCGacccguuGGCGUGGgggaCCg -3'
miRNA:   3'- cCUCCGg---CCACUGCgu-----CCGCACCg---GG- -5'
18683 5' -62.5 NC_004682.1 + 22851 0.67 0.292179
Target:  5'- cGGAGcccgcGCUGGUGcGCGguGGCaucaUGGCCg -3'
miRNA:   3'- -CCUC-----CGGCCAC-UGCguCCGc---ACCGGg -5'
18683 5' -62.5 NC_004682.1 + 19340 0.68 0.285279
Target:  5'- cGAGGgacUCGGaaUGGCGCaAGGCGUGGgCg -3'
miRNA:   3'- cCUCC---GGCC--ACUGCG-UCCGCACCgGg -5'
18683 5' -62.5 NC_004682.1 + 30671 0.68 0.285279
Target:  5'- aGGAcGGCgCGGaccuccaccugaUGAcCGCAcgggccGCGUGGCCCg -3'
miRNA:   3'- -CCU-CCG-GCC------------ACU-GCGUc-----CGCACCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.