miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18710 5' -59 NC_004682.1 + 49645 0.66 0.541601
Target:  5'- cGCUGaCGGUGguucgcaaggacCCGaugagcUACGGCGuCGAGCg -3'
miRNA:   3'- cCGACaGCCGU------------GGC------AUGCCGC-GCUCG- -5'
18710 5' -59 NC_004682.1 + 5046 0.66 0.541601
Target:  5'- cGCUGUCGGCGauCCagACcGCcCGAGCa -3'
miRNA:   3'- cCGACAGCCGU--GGcaUGcCGcGCUCG- -5'
18710 5' -59 NC_004682.1 + 17117 0.66 0.531245
Target:  5'- aGGC-GUCaccgacGCACUGgcuucCGGCGCGGGUc -3'
miRNA:   3'- -CCGaCAGc-----CGUGGCau---GCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 33639 0.66 0.531245
Target:  5'- cGGCgacaaCGGCGCUcUGCuGgGCGAGCu -3'
miRNA:   3'- -CCGaca--GCCGUGGcAUGcCgCGCUCG- -5'
18710 5' -59 NC_004682.1 + 29993 0.66 0.520961
Target:  5'- aGGCUaUCcaggaacuGCGCCGgauCGGCGCGuucGGCa -3'
miRNA:   3'- -CCGAcAGc-------CGUGGCau-GCCGCGC---UCG- -5'
18710 5' -59 NC_004682.1 + 12337 0.66 0.520961
Target:  5'- cGGCaccGUUGGCaACCGcgugguCGGCGUcauGGGCg -3'
miRNA:   3'- -CCGa--CAGCCG-UGGCau----GCCGCG---CUCG- -5'
18710 5' -59 NC_004682.1 + 7160 0.66 0.510756
Target:  5'- gGGCguccugaacugGUgGGCugCGUAcgucaagaccccCGGCgGUGAGCa -3'
miRNA:   3'- -CCGa----------CAgCCGugGCAU------------GCCG-CGCUCG- -5'
18710 5' -59 NC_004682.1 + 30812 0.66 0.510756
Target:  5'- cGCUGcccagCGGCgACUGgcUGGUGCG-GCg -3'
miRNA:   3'- cCGACa----GCCG-UGGCauGCCGCGCuCG- -5'
18710 5' -59 NC_004682.1 + 42543 0.66 0.499627
Target:  5'- uGGCUcggCGGCGCCucUGCGGCcaacugaGUGAGUu -3'
miRNA:   3'- -CCGAca-GCCGUGGc-AUGCCG-------CGCUCG- -5'
18710 5' -59 NC_004682.1 + 23398 0.67 0.480666
Target:  5'- aGGCUGgcUCGGCACUggcgcauucgagGUAggUGGCG-GGGCc -3'
miRNA:   3'- -CCGAC--AGCCGUGG------------CAU--GCCGCgCUCG- -5'
18710 5' -59 NC_004682.1 + 3230 0.67 0.474751
Target:  5'- cGGCg--CGGCACagggcgacaucgGCGGCGCaGGCa -3'
miRNA:   3'- -CCGacaGCCGUGgca---------UGCCGCGcUCG- -5'
18710 5' -59 NC_004682.1 + 39906 0.67 0.467896
Target:  5'- cGGCUGgCaagagcgcagccgaGGCAUCGgGCGGCGCGcuauacGCg -3'
miRNA:   3'- -CCGACaG--------------CCGUGGCaUGCCGCGCu-----CG- -5'
18710 5' -59 NC_004682.1 + 29512 0.67 0.461093
Target:  5'- cGUUGUCGGCcaacACCuccUGCGGUacGCGGGUu -3'
miRNA:   3'- cCGACAGCCG----UGGc--AUGCCG--CGCUCG- -5'
18710 5' -59 NC_004682.1 + 45483 0.67 0.461093
Target:  5'- cGCUGUCGGCGuugaugccuCCGUGCucaGCGaUGuGCg -3'
miRNA:   3'- cCGACAGCCGU---------GGCAUGc--CGC-GCuCG- -5'
18710 5' -59 NC_004682.1 + 1998 0.67 0.451465
Target:  5'- cGGCgGUUGGCcccccgagGCCG-ACGGCGCacccguccaGGGUg -3'
miRNA:   3'- -CCGaCAGCCG--------UGGCaUGCCGCG---------CUCG- -5'
18710 5' -59 NC_004682.1 + 1220 0.67 0.451465
Target:  5'- aGGCUGcUCaGCAUCGaguugACGGUgGUGAGUa -3'
miRNA:   3'- -CCGAC-AGcCGUGGCa----UGCCG-CGCUCG- -5'
18710 5' -59 NC_004682.1 + 14906 0.67 0.450509
Target:  5'- cGGCgucUCGGCugCGaGCGGCGacccgacCGAGa -3'
miRNA:   3'- -CCGac-AGCCGugGCaUGCCGC-------GCUCg -5'
18710 5' -59 NC_004682.1 + 34711 0.67 0.441949
Target:  5'- uGCUGgaucgcaacCGGCGCau--CGGCGUGGGCc -3'
miRNA:   3'- cCGACa--------GCCGUGgcauGCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 23660 0.67 0.441949
Target:  5'- gGGcCUG-CGGCccuCC-UGCGGgGCGAGUu -3'
miRNA:   3'- -CC-GACaGCCGu--GGcAUGCCgCGCUCG- -5'
18710 5' -59 NC_004682.1 + 4796 0.67 0.432547
Target:  5'- cGGCUGUgGGagcaCAUCGUcCGGUcgaucaacGCGGGCu -3'
miRNA:   3'- -CCGACAgCC----GUGGCAuGCCG--------CGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.