miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18730 3' -62.1 NC_004682.1 + 6072 0.66 0.400723
Target:  5'- aCGACGCCAauacCGgCGGgcuGGUGaGCCgUugGCa -3'
miRNA:   3'- -GCUGCGGU----GCgGCU---CCAC-CGG-GugCG- -5'
18730 3' -62.1 NC_004682.1 + 29180 0.66 0.400723
Target:  5'- gGACGCCAuCGCCGAguugaucagcgaGGUGaGgaagucgccuCCCAUGUu -3'
miRNA:   3'- gCUGCGGU-GCGGCU------------CCAC-C----------GGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 8342 0.66 0.400723
Target:  5'- uGAucCGUCuguucgACGCUGAGGUGGCCgCAgGg -3'
miRNA:   3'- gCU--GCGG------UGCGGCUCCACCGG-GUgCg -5'
18730 3' -62.1 NC_004682.1 + 30573 0.66 0.398106
Target:  5'- uCGG-GCCACGCgGcccgugcggucaucAGGUggaGGUCCGCGCc -3'
miRNA:   3'- -GCUgCGGUGCGgC--------------UCCA---CCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 23201 0.66 0.392042
Target:  5'- uGACGaCCugGCUGAGGccGUCCGugagggguucCGCg -3'
miRNA:   3'- gCUGC-GGugCGGCUCCacCGGGU----------GCG- -5'
18730 3' -62.1 NC_004682.1 + 45430 0.66 0.392041
Target:  5'- uGACGaaCACGUCGGGGUcGGUcaCCAgGCc -3'
miRNA:   3'- gCUGCg-GUGCGGCUCCA-CCG--GGUgCG- -5'
18730 3' -62.1 NC_004682.1 + 40082 0.66 0.383483
Target:  5'- -cGCGCCcgagagGCGCUGu-GUGGCCCGCa- -3'
miRNA:   3'- gcUGCGG------UGCGGCucCACCGGGUGcg -5'
18730 3' -62.1 NC_004682.1 + 15386 0.66 0.37505
Target:  5'- -cGCGCCGCGaaGAGGUGuuCCA-GCu -3'
miRNA:   3'- gcUGCGGUGCggCUCCACcgGGUgCG- -5'
18730 3' -62.1 NC_004682.1 + 3881 0.66 0.37505
Target:  5'- -uGCGCCACGCgGAGGaugucgUGGgC-ACGCc -3'
miRNA:   3'- gcUGCGGUGCGgCUCC------ACCgGgUGCG- -5'
18730 3' -62.1 NC_004682.1 + 26931 0.66 0.37505
Target:  5'- gCGGCaGCCGCGUCcuggGGGuGUGGCCgGUGCc -3'
miRNA:   3'- -GCUG-CGGUGCGG----CUC-CACCGGgUGCG- -5'
18730 3' -62.1 NC_004682.1 + 47635 0.66 0.37505
Target:  5'- cCGACGUaggugAUGCCGuuGUGgacgcgguuGCCCGCGCc -3'
miRNA:   3'- -GCUGCGg----UGCGGCucCAC---------CGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 18094 0.66 0.363456
Target:  5'- aCGACGaacucgucaccauCUACGCCGAggccGGUcugggucggaagaaGGCCCGCGa -3'
miRNA:   3'- -GCUGC-------------GGUGCGGCU----CCA--------------CCGGGUGCg -5'
18730 3' -62.1 NC_004682.1 + 33470 0.66 0.350512
Target:  5'- uGACGCC--GUCGAGGgucugcgagaGGCCCuucauCGCg -3'
miRNA:   3'- gCUGCGGugCGGCUCCa---------CCGGGu----GCG- -5'
18730 3' -62.1 NC_004682.1 + 4231 0.66 0.350512
Target:  5'- -uGCGCCugGUCGAGaacGUGcGUCC-CGCu -3'
miRNA:   3'- gcUGCGGugCGGCUC---CAC-CGGGuGCG- -5'
18730 3' -62.1 NC_004682.1 + 23663 0.66 0.349714
Target:  5'- cCGGCGCgAaguggguCGCCGAGcagGGCCaCACGg -3'
miRNA:   3'- -GCUGCGgU-------GCGGCUCca-CCGG-GUGCg -5'
18730 3' -62.1 NC_004682.1 + 47754 0.67 0.342591
Target:  5'- gGugGUgGgguaGCCGGGcUGGCUCGCGCc -3'
miRNA:   3'- gCugCGgUg---CGGCUCcACCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 39292 0.67 0.342591
Target:  5'- aCGAUGCCuguuuCGUgGucGUGGUCgACGCu -3'
miRNA:   3'- -GCUGCGGu----GCGgCucCACCGGgUGCG- -5'
18730 3' -62.1 NC_004682.1 + 38017 0.67 0.334799
Target:  5'- -aGCGCCuccucggUGCCGAGGUG-CCUcaGCGCc -3'
miRNA:   3'- gcUGCGGu------GCGGCUCCACcGGG--UGCG- -5'
18730 3' -62.1 NC_004682.1 + 10813 0.67 0.327138
Target:  5'- gCGAUcaaGCUACGgucggccaCCGAGGgccucGGCCuCGCGCa -3'
miRNA:   3'- -GCUG---CGGUGC--------GGCUCCa----CCGG-GUGCG- -5'
18730 3' -62.1 NC_004682.1 + 15703 0.67 0.319607
Target:  5'- aGAuCGaCCACGCCaucgcgcagugcGuGGUGGCCgGCGg -3'
miRNA:   3'- gCU-GC-GGUGCGG------------CuCCACCGGgUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.