miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18743 3' -59.8 NC_004682.1 + 9401 0.66 0.481442
Target:  5'- aGCGCCu-GCGugguCGGCcuGCACCacgucaccgGAGGCu -3'
miRNA:   3'- -CGCGGcuCGCu---GUCGu-CGUGG---------CUCCG- -5'
18743 3' -59.8 NC_004682.1 + 41987 0.66 0.481442
Target:  5'- gGCGUCGGGcCGGCgcucggacucauAGUAGgccguguuguCGCCGAGGUc -3'
miRNA:   3'- -CGCGGCUC-GCUG------------UCGUC----------GUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 23111 0.66 0.481442
Target:  5'- aCGCUG-GCGAgaCAGCAuCACCGucAGGUg -3'
miRNA:   3'- cGCGGCuCGCU--GUCGUcGUGGC--UCCG- -5'
18743 3' -59.8 NC_004682.1 + 16321 0.66 0.481442
Target:  5'- cUGCUccGCGACGGCaugaAGgACUGGGGCc -3'
miRNA:   3'- cGCGGcuCGCUGUCG----UCgUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 33205 0.66 0.471562
Target:  5'- uUGCCGAGCGuCuGCAGguU--GGGCa -3'
miRNA:   3'- cGCGGCUCGCuGuCGUCguGgcUCCG- -5'
18743 3' -59.8 NC_004682.1 + 34601 0.66 0.471562
Target:  5'- aGCGCCagGAaCGACGcCA-CGCCGAGGUg -3'
miRNA:   3'- -CGCGG--CUcGCUGUcGUcGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 2962 0.66 0.471562
Target:  5'- gGCG-CGGGCG---GCGGCGCUG-GGCa -3'
miRNA:   3'- -CGCgGCUCGCuguCGUCGUGGCuCCG- -5'
18743 3' -59.8 NC_004682.1 + 38180 0.66 0.47058
Target:  5'- uGUGCCuccuacgGAGuCGACAGaAGgACCGGGGg -3'
miRNA:   3'- -CGCGG-------CUC-GCUGUCgUCgUGGCUCCg -5'
18743 3' -59.8 NC_004682.1 + 33125 0.66 0.461786
Target:  5'- -gGCCGGGgaucauCGGCuggaucugcuGCAGCGCCGuGGUc -3'
miRNA:   3'- cgCGGCUC------GCUGu---------CGUCGUGGCuCCG- -5'
18743 3' -59.8 NC_004682.1 + 47855 0.66 0.461786
Target:  5'- cGCGUCGgagGGUGACGGaguuccacugccCAGCGCCGccGCc -3'
miRNA:   3'- -CGCGGC---UCGCUGUC------------GUCGUGGCucCG- -5'
18743 3' -59.8 NC_004682.1 + 9896 0.66 0.461786
Target:  5'- aCGUCGAGCGAgccgccaAGCGGUggauuCCguGAGGCg -3'
miRNA:   3'- cGCGGCUCGCUg------UCGUCGu----GG--CUCCG- -5'
18743 3' -59.8 NC_004682.1 + 4661 0.66 0.461786
Target:  5'- uCGCCGAGa---AGCugacguGCAUCGAGGUc -3'
miRNA:   3'- cGCGGCUCgcugUCGu-----CGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 8516 0.66 0.452118
Target:  5'- aGUGCgGAGCuGGCucuaccGCACCGAGGa -3'
miRNA:   3'- -CGCGgCUCG-CUGucgu--CGUGGCUCCg -5'
18743 3' -59.8 NC_004682.1 + 49442 0.66 0.452118
Target:  5'- cGCGCCaGAG-GAcCAGCgAGuCGCuguCGAGGCg -3'
miRNA:   3'- -CGCGG-CUCgCU-GUCG-UC-GUG---GCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 50362 0.66 0.452118
Target:  5'- aGCGCCGc-CGGaAGCGGC-CCugGAGGCc -3'
miRNA:   3'- -CGCGGCucGCUgUCGUCGuGG--CUCCG- -5'
18743 3' -59.8 NC_004682.1 + 19982 0.66 0.452118
Target:  5'- cGCGaCUGccGCGACGGUGaagucGCGCCugGAGGCg -3'
miRNA:   3'- -CGC-GGCu-CGCUGUCGU-----CGUGG--CUCCG- -5'
18743 3' -59.8 NC_004682.1 + 20379 0.66 0.452118
Target:  5'- ---gUGAGCGG-AGCGGUuCCGGGGCa -3'
miRNA:   3'- cgcgGCUCGCUgUCGUCGuGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 24595 0.66 0.452118
Target:  5'- --aCCGgaAGCucGCGGaCGGCACCGAGGUg -3'
miRNA:   3'- cgcGGC--UCGc-UGUC-GUCGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 25003 0.66 0.451157
Target:  5'- aCGCCGAcuCGGCGGCAucugcucGCAUccagggCGAGGCc -3'
miRNA:   3'- cGCGGCUc-GCUGUCGU-------CGUG------GCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 22858 0.66 0.442561
Target:  5'- cGCGCUGGuGCG-CGGUGGCAUCauGGCc -3'
miRNA:   3'- -CGCGGCU-CGCuGUCGUCGUGGcuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.