miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 23511 0.66 0.620889
Target:  5'- cUGCGAagACaguCUGUC-GCaacuguacuuGUCUCGGCCa -3'
miRNA:   3'- -ACGCU--UGgu-GGCAGuCG----------CAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 12958 0.66 0.61439
Target:  5'- cGCGGA-CAUCG-CGGCGcguucucgggguacCUCGGCCa -3'
miRNA:   3'- aCGCUUgGUGGCaGUCGCa-------------GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 6834 0.66 0.610061
Target:  5'- cGCGuAAgCACCG-CAGCGugUCUCaGCUc -3'
miRNA:   3'- aCGC-UUgGUGGCaGUCGC--AGAGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 38879 0.66 0.610061
Target:  5'- aGCGcGAUgGCC-UCGGCGaUCUUGGUCc -3'
miRNA:   3'- aCGC-UUGgUGGcAGUCGC-AGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 32578 0.66 0.610061
Target:  5'- cUGCGcGgCACCGaCAGCcagGUCgauacCGGCCu -3'
miRNA:   3'- -ACGCuUgGUGGCaGUCG---CAGa----GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 30227 0.66 0.599251
Target:  5'- cGUGAACCcggccucaugcaGCCGgaUCAGCGcCUcccCGGUCa -3'
miRNA:   3'- aCGCUUGG------------UGGC--AGUCGCaGA---GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 40908 0.66 0.599251
Target:  5'- cUGCGucuGCCuggcggcguaCGUCGGCGUCgacggaUCGcGCCa -3'
miRNA:   3'- -ACGCu--UGGug--------GCAGUCGCAG------AGC-CGG- -5'
18748 5' -57.4 NC_004682.1 + 26630 0.66 0.599251
Target:  5'- gGCGAcgguGCCcgagauGCUcugguagucgGUCAGCGUCUC-GCCa -3'
miRNA:   3'- aCGCU----UGG------UGG----------CAGUCGCAGAGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 25870 0.66 0.598171
Target:  5'- gGCcuugguCCACuCGUCGGCGUUggucuugUCGGUCu -3'
miRNA:   3'- aCGcuu---GGUG-GCAGUCGCAG-------AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 9457 0.66 0.588468
Target:  5'- gGCGAucCCGCUGUcCGGUGUCaagGGUCa -3'
miRNA:   3'- aCGCUu-GGUGGCA-GUCGCAGag-CCGG- -5'
18748 5' -57.4 NC_004682.1 + 29502 0.66 0.588468
Target:  5'- aGCcagGAGCCGCCGaaGGCGgUCUCacuGCCc -3'
miRNA:   3'- aCG---CUUGGUGGCagUCGC-AGAGc--CGG- -5'
18748 5' -57.4 NC_004682.1 + 33483 0.66 0.588468
Target:  5'- cGCcguuGCCGCCGcCAGCGgccugcugCggGGCCa -3'
miRNA:   3'- aCGcu--UGGUGGCaGUCGCa-------GagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 45776 0.66 0.588468
Target:  5'- aGcCGGugCGgCGUCGGCGUacgcguagcccUUCGGCg -3'
miRNA:   3'- aC-GCUugGUgGCAGUCGCA-----------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 2053 0.66 0.588468
Target:  5'- cGCGGACUgACUGguccgCAGgGUCcgacCGGCCc -3'
miRNA:   3'- aCGCUUGG-UGGCa----GUCgCAGa---GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 8861 0.66 0.588468
Target:  5'- aGCGccGGCCcgacGCCGUaGGCGUCaCGGUCc -3'
miRNA:   3'- aCGC--UUGG----UGGCAgUCGCAGaGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 10233 0.66 0.577721
Target:  5'- cGCGcucGCCAacuaCGUCAuGCGUUg-GGCCa -3'
miRNA:   3'- aCGCu--UGGUg---GCAGU-CGCAGagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 6155 0.66 0.577721
Target:  5'- gGCGGGCCGCUGcgagucgaCGGCuaUUUCGGCUa -3'
miRNA:   3'- aCGCUUGGUGGCa-------GUCGc-AGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 46325 0.66 0.577721
Target:  5'- cUGCGGucguagggaaguACCuucuCCGUCAucGCGUCa-GGCCc -3'
miRNA:   3'- -ACGCU------------UGGu---GGCAGU--CGCAGagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 26334 0.66 0.567017
Target:  5'- gGCGGuguacgucuucgACCGCCuguuccccuGUCGGCG-CgcagCGGCCu -3'
miRNA:   3'- aCGCU------------UGGUGG---------CAGUCGCaGa---GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 36365 0.66 0.567017
Target:  5'- cUGCGGACCcgguucaucUCGUCGGUGagggcCUCGGUCc -3'
miRNA:   3'- -ACGCUUGGu--------GGCAGUCGCa----GAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.